RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 CMTM4Q8IZR5 234 aa7.45□□□□□ -1.22
NUP54-209ENST00000510569 IKZF4Q9H2S9 585 aa7.45□□□□□ -1.22
NUP54-209ENST00000510569 USP36Q9P275 1121 aaKnown RBP7.45□□□□□ -1.22
NUP54-209ENST00000510569 ZNF891A8MT65 544 aaPredicted RBP7.44□□□□□ -1.22
NUP54-209ENST00000510569 FSBPO95073 299 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 APOL3O95236 402 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 TKFCQ3LXA3 575 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 LRRTM3Q86VH5 581 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 UNC5BQ8IZJ1 945 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 NINJ1Q92982 152 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 HIST1H2AHQ96KK5 128 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 ZNF512Q96ME7 567 aaPredicted RBP7.44□□□□□ -1.22
NUP54-209ENST00000510569 HIST1H2AJQ99878 128 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 NOL10Q9BSC4 688 aaKnown RBP7.44□□□□□ -1.22
NUP54-209ENST00000510569 GPR87Q9BY21 358 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 IFT57Q9NWB7 429 aa7.44□□□□□ -1.22
NUP54-209ENST00000510569 ELL2O00472 640 aaPredicted RBP7.43□□□□□ -1.22
NUP54-209ENST00000510569 TGM5O43548 720 aa7.43□□□□□ -1.22
NUP54-209ENST00000510569 IPO13O94829 963 aaKnown RBP7.43□□□□□ -1.22
NUP54-209ENST00000510569 GAAP10253 952 aa7.43□□□□□ -1.22
NUP54-209ENST00000510569 GPR158Q5T848 1215 aa7.43□□□□□ -1.22
NUP54-209ENST00000510569 NAIF1Q69YI7 327 aaPredicted RBP7.43□□□□□ -1.22
NUP54-209ENST00000510569 GSPT2Q8IYD1 628 aaKnown RBP7.43□□□□□ -1.22
NUP54-209ENST00000510569 MDGA1Q8NFP4 955 aa7.43□□□□□ -1.22
NUP54-209ENST00000510569 CHTF18Q8WVB6 975 aa7.43□□□□□ -1.22
NUP54-209ENST00000510569 CLIP3Q96DZ5 547 aa7.43□□□□□ -1.22
NUP54-209ENST00000510569 CEP89Q96ST8 783 aa7.43□□□□□ -1.22
NUP54-209ENST00000510569 XDHP47989 1333 aa7.43□□□□□ -1.22
NUP54-209ENST00000510569 NPEPPSP55786 919 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 PCSK4Q6UW60 755 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 ZNF627Q7L945 461 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 PASD1Q8IV76 773 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 ELOA2Q8IYF1 753 aaPredicted RBP7.42□□□□□ -1.22
NUP54-209ENST00000510569 NXPE1Q8N323 547 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 ARL8AQ96BM9 186 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 UIMC1Q96RL1 719 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 ENKD1Q9H0I2 346 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 SLC2A4RGQ9NR83 387 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 THG1LQ9NWX6 298 aaKnown RBP7.42□□□□□ -1.22
NUP54-209ENST00000510569 GPRC5BQ9NZH0 403 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 REXO2Q9Y3B8 237 aaKnown RBP7.42□□□□□ -1.22
NUP54-209ENST00000510569 PCDHB6Q9Y5E3 794 aa7.42□□□□□ -1.22
NUP54-209ENST00000510569 GOLGA6L6A8MZA4 724 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 NRP1O14786 923 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 NEK4P51957 841 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 INHBEP58166 350 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 PHC1P78364 1004 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 DCAF17Q5H9S7 520 aaPredicted RBP7.41□□□□□ -1.22
NUP54-209ENST00000510569 ZBTB41Q5SVQ8 909 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 Q6ZPA2 131 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 ESPNLQ6ZVH7 1005 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 SMC1BQ8NDV3 1235 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 PIK3C3Q8NEB9 887 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 ATXN2LQ8WWM7 1075 aaKnown RBP7.41□□□□□ -1.22
NUP54-209ENST00000510569 APPBP2Q92624 585 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 MNTQ99583 582 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 PRRX2Q99811 253 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 FANCLQ9NW38 375 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 TRPS1Q9UHF7 1281 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 MYPNQ86TC9 1320 aa7.41□□□□□ -1.22
NUP54-209ENST00000510569 A0A087X1B8 175 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 GRXCR1A8MXD5 290 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 MFAP3LO75121 409 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 SEC24DO94855 1032 aaPredicted RBP7.4□□□□□ -1.22
NUP54-209ENST00000510569 PCDH8O95206 1070 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 PFKMP08237 780 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 SMN1Q16637 294 aaKnown RBP7.4□□□□□ -1.22
NUP54-209ENST00000510569 RABL3Q5HYI8 236 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 APBB1IPQ7Z5R6 666 aaPredicted RBP7.4□□□□□ -1.22
NUP54-209ENST00000510569 NIM1KQ8IY84 436 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 ULK2Q8IYT8 1036 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 PPM1KQ8N3J5 372 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 CDYL2Q8N8U2 506 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 ST8SIA2Q92186 375 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 ZNF496Q96IT1 587 aaPredicted RBP7.4□□□□□ -1.22
NUP54-209ENST00000510569 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.4□□□□□ -1.22
NUP54-209ENST00000510569 NCDNQ9UBB6 729 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 MSRAQ9UJ68 235 aa7.4□□□□□ -1.22
NUP54-209ENST00000510569 STC2O76061 302 aa7.39□□□□□ -1.23
NUP54-209ENST00000510569 KRT4P19013 534 aa7.39□□□□□ -1.23
NUP54-209ENST00000510569 KPNA1P52294 538 aaPredicted RBP7.39□□□□□ -1.23
NUP54-209ENST00000510569 SEPT7Q16181 437 aaKnown RBP7.39□□□□□ -1.23
NUP54-209ENST00000510569 C21orf62-AS1Q17RA5 79 aa7.39□□□□□ -1.23
NUP54-209ENST00000510569 KRTAP5-3Q6L8H2 238 aa7.39□□□□□ -1.23
NUP54-209ENST00000510569 MB21D1Q8N884 522 aa7.39□□□□□ -1.23
NUP54-209ENST00000510569 ZNF610Q8N9Z0 462 aa7.39□□□□□ -1.23
NUP54-209ENST00000510569 C11orf21Q9P2W6 132 aa7.39□□□□□ -1.23
NUP54-209ENST00000510569 ST20-MTHFSA0A0A6YYL1 179 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 ALDH1A2O94788 518 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 PTGS2P35354 604 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 GPR15P49685 360 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 OCRLQ01968 901 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 PCBP1Q15365 356 aaKnown RBP eCLIP7.38□□□□□ -1.23
NUP54-209ENST00000510569 CCDC178Q5BJE1 867 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 CNNM4Q6P4Q7 775 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 MRGPRGQ86SM5 289 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 FERMT2Q96AC1 680 aa7.38□□□□□ -1.23
NUP54-209ENST00000510569 FDXACB1Q9BRP7 624 aaPredicted RBP7.38□□□□□ -1.23
NUP54-209ENST00000510569 TARS2Q9BW92 718 aaKnown RBP7.38□□□□□ -1.23
NUP54-209ENST00000510569 ING3Q9NXR8 418 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms