RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 TECTAO75443 2155 aa11.13□□□□□ -0.63
NUP54-203ENST00000504173 IGKV6-21A0A0C4DH24 114 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 FAM237AA0A1B0GTK4 181 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 GADD45BO75293 160 aaPredicted RBP11.12□□□□□ -0.63
NUP54-203ENST00000504173 CYP11B2P19099 503 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 CYP2C18P33260 490 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 THPOP40225 353 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 DNM2P50570 870 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 SLC12A3P55017 1021 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 TAP1Q03518 808 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 ZP2Q05996 745 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 E2F4Q16254 413 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 TRIM71Q2Q1W2 868 aaKnown RBP11.12□□□□□ -0.63
NUP54-203ENST00000504173 NAALADL2Q58DX5 795 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 FAM102BQ5T8I3 360 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 RINT1Q6NUQ1 792 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 SV2BQ7L1I2 683 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 MAEAQ7L5Y9 396 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 CEP57L1Q8IYX8 460 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 KIAA0319LQ8IZA0 1049 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 LINC01465Q8N7H1 131 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 MCPH1Q8NEM0 835 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 TCP11Q8WWU5 503 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 PSPC1Q8WXF1 523 aaKnown RBP11.12□□□□□ -0.63
NUP54-203ENST00000504173 ARNTL2Q8WYA1 636 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 TMEM143Q96AN5 459 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 HIPK3Q9H422 1215 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 CUEDC2Q9H467 287 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 CERS4Q9HA82 394 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 XPNPEP1Q9NQW7 623 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 AKT3Q9Y243 479 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 ACACBO00763 2458 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 MYO15AQ9UKN7 3530 aa11.12□□□□□ -0.63
NUP54-203ENST00000504173 EVPLQ92817 2033 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 M0QZ92 97 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 CAND2O75155 1236 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 VTNP04004 478 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 KRT18P05783 430 aaKnown RBP11.11□□□□□ -0.63
NUP54-203ENST00000504173 CTSHP09668 335 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 CKBP12277 381 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 UBE2HP62256 183 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 TMEM62Q0P6H9 643 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 MKRN4PQ13434 485 aaPredicted RBP11.11□□□□□ -0.63
NUP54-203ENST00000504173 DRP2Q13474 957 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 HERC4Q5GLZ8 1057 aaPredicted RBP11.11□□□□□ -0.63
NUP54-203ENST00000504173 IER5Q5VY09 327 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 C1orf186Q6ZWK4 172 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 RPAINQ86UA6 219 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 NME8Q8N427 588 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 SCLT1Q96NL6 688 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 PPP1R16BQ96T49 567 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 NOC4LQ9BVI4 516 aaKnown RBP11.11□□□□□ -0.63
NUP54-203ENST00000504173 POLR3FQ9H1D9 316 aaPredicted RBP11.11□□□□□ -0.63
NUP54-203ENST00000504173 MAGEF1Q9HAY2 307 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 GPRC5CQ9NQ84 441 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 KCND2Q9NZV8 630 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 SUCLA2Q9P2R7 463 aaPredicted RBP11.11□□□□□ -0.63
NUP54-203ENST00000504173 USP25Q9UHP3 1055 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 SERTAD1Q9UHV2 236 aa11.11□□□□□ -0.63
NUP54-203ENST00000504173 UMODL1Q5DID0 1318 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 PITPNM1O00562 1244 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 ZNF202O95125 648 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 SELPP16109 830 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 KCNA5P22460 613 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 GUCY2CP25092 1073 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 MRPS6P82932 125 aaKnown RBP11.1□□□□□ -0.63
NUP54-203ENST00000504173 AMPD3Q01432 767 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 FAM160A1Q05DH4 1040 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 RBL2Q08999 1139 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 RAD51AP2Q09MP3 1159 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 ZNF618Q5T7W0 954 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 LRRC8DQ7L1W4 858 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 RHPN2Q8IUC4 686 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 RPUSD2Q8IZ73 545 aaKnown RBP11.1□□□□□ -0.63
NUP54-203ENST00000504173 CNNM3Q8NE01 707 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 PRPF31Q8WWY3 499 aaKnown RBP11.1□□□□□ -0.63
NUP54-203ENST00000504173 KIFAP3Q92845 792 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 VWCEQ96DN2 955 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 TIPINQ9BVW5 301 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 LRRC27Q9C0I9 530 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 TNMDQ9H2S6 317 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 GINS2Q9Y248 185 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 COL4A3BPQ9Y5P4 624 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 TRPV2Q9Y5S1 764 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 CDY2AQ9Y6F7 541 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 ZNF292O60281 2723 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 CFAP47Q6ZTR5 3102 aa11.1□□□□□ -0.63
NUP54-203ENST00000504173 WDR87Q6ZQQ6 2873 aa11.09□□□□□ -0.63
NUP54-203ENST00000504173 COL4A4P53420 1690 aaPredicted RBP11.09□□□□□ -0.63
NUP54-203ENST00000504173 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.09□□□□□ -0.63
NUP54-203ENST00000504173 NPHP3-ACAD11A0A0J9YXS1 232 aa11.09□□□□□ -0.63
NUP54-203ENST00000504173 RSPH10B2B2RC85 870 aa11.09□□□□□ -0.63
NUP54-203ENST00000504173 ACTN4O43707 911 aaKnown RBP11.09□□□□□ -0.63
NUP54-203ENST00000504173 HIP1RO75146 1068 aa11.09□□□□□ -0.63
NUP54-203ENST00000504173 TBCAO75347 108 aaKnown RBP11.09□□□□□ -0.63
NUP54-203ENST00000504173 ARHGEF15O94989 841 aa11.09□□□□□ -0.63
NUP54-203ENST00000504173 SLFN14P0C7P3 912 aa11.09□□□□□ -0.63
NUP54-203ENST00000504173 RSPH10BP0C881 870 aa11.09□□□□□ -0.63
NUP54-203ENST00000504173 LIG1P18858 919 aa11.09□□□□□ -0.63
NUP54-203ENST00000504173 ARL2P36404 184 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 162.5 ms