RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CCDC172P0C7W6 258 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 LSP1P33241 339 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 POU5F1Q01860 360 aaKnown RBP17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 SLC35G2Q8TBE7 412 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 SEC14L1Q92503 715 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 NMRK2Q9NPI5 230 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 AMACRQ9UHK6 382 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 UBE4BO95155 1302 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TMEM253P0C7T8 217 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 UBXN2AP68543 259 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ANGEL2Q5VTE6 544 aaKnown RBP17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 MAATS1Q7Z4T9 603 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 FAM107BQ9H098 131 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 INTS2Q9H0H0 1204 aaKnown RBP17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 SLITRK6Q9H5Y7 841 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 RRAGCQ9HB90 399 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 SEL1LQ9UBV2 794 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ZNF70Q9UC06 446 aaPredicted RBP17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 AMFRQ9UKV5 643 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PPP1R9AQ9ULJ8 1098 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TTC7AQ9ULT0 858 aaPredicted RBP17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 SYNPO2Q9UMS6 1093 aa17.45■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 DAPK3O43293 454 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PPP1R12BO60237 982 aaPredicted RBP17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ZEB2O60315 1214 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TRIM49P0CI25 452 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TRIM49CP0CI26 452 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CYP2J2P51589 502 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 STAT2P52630 851 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 DCAF12L1Q5VU92 463 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TADA2BQ86TJ2 420 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 OR2W6PQ8NHA6 318 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ACER1Q8TDN7 264 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 STRA6Q9BX79 667 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 HACL1Q9UJ83 578 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 NR2E1Q9Y466 385 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 DCAF8L1A6NGE4 600 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 B3GNT9Q6UX72 402 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 FAM178BQ8IXR5 827 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 RFFLQ8WZ73 363 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 LRRC45Q96CN5 670 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ARHGEF26Q96DR7 871 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 NACC1Q96RE7 527 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 EPN3Q9H201 632 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 UNC45AQ9H3U1 944 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 GGA3Q9NZ52 723 aa17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 COL2A1P02458 1487 aaPredicted RBP17.44■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CENPFP49454 3210 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 GCOM1H8Y6P7 765 aaPredicted RBP17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 NDUFAB1O14561 156 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TTI1O43156 1089 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 POLR2MP0CAP2 368 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ARP10275 920 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 MUTP22033 750 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 MDH1P40925 334 aaKnown RBP17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ZNF844Q08AG5 666 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PLS1Q14651 629 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PPP2R5AQ15172 486 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PTGISQ16647 500 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CCDC174Q6PII3 467 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PALB2Q86YC2 1186 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 LMO3Q8TAP4 145 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CSRNP1Q96S65 589 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CELF4Q9BZC1 486 aaKnown RBP17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TAS2R14Q9NYV8 317 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 GAS7O60861 476 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PPP1R37O75864 691 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ZNF280AP59817 542 aaPredicted RBP17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 MAPK7Q13164 816 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PRKG1Q13976 671 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TTC31Q49AM3 519 aaPredicted RBP17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 PHLDB3Q6NSJ2 640 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 HS2ST1Q7LGA3 356 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 DAW1Q8N136 415 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 APEX2Q9UBZ4 518 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ODF2LQ9ULJ1 636 aa17.43■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 MYO1FO00160 1098 aa17.42■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CEP55Q53EZ4 464 aa17.42■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ODR4Q5SWX8 454 aa17.42■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 MIGA2Q7L4E1 593 aa17.42■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CCDC26Q8TAB7 109 aa17.42■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 RANBP17Q9H2T7 1088 aaKnown RBP17.42■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 FRMD4BQ9Y2L6 1034 aa17.42■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 TMX2Q9Y320 296 aa17.42■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 FGGP02679 453 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ABCB4P21439 1286 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 RPS12P25398 132 aaKnown RBP17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 KIF22Q14807 665 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 SLC9A9Q8IVB4 645 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 ZNF577Q9BSK1 485 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 KCND2Q9NZV8 630 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 COG5Q9UP83 839 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 LOXHD1Q8IVV2 1947 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 FOXN3O00409 490 aaPredicted RBP17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 EPHX2P34913 555 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 CTNNA1P35221 906 aaKnown RBP17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 MYL7Q01449 175 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 BFSP1Q12934 665 aa17.41■□□□□ 0.38
MSH5-SAPCD1-208ENST00000498473 NAA35Q5VZE5 725 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms