RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 PCDHA8Q9Y5H6 950 aa8.13□□□□□ -1.11
VIM-207ENST00000495528 CCDC163A0A0D9SF12 145 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 TLDC2A0PJX2 215 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 ELL2O00472 640 aaPredicted RBP8.12□□□□□ -1.11
VIM-207ENST00000495528 PDE8AO60658 829 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 CYBBP04839 570 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 GUCY1A3Q02108 690 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 PRAMEF18Q5VWM3 479 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 WWC2Q6AWC2 1192 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 PAQR3Q6TCH7 311 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 MAMDC2Q7Z304 686 aaPredicted RBP8.12□□□□□ -1.11
VIM-207ENST00000495528 CTU1Q7Z7A3 348 aaKnown RBP8.12□□□□□ -1.11
VIM-207ENST00000495528 SLC7A14Q8TBB6 771 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 KCNJ15Q99712 375 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 ZFYVE21Q9BQ24 234 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 ZNF552Q9H707 407 aaPredicted RBP8.12□□□□□ -1.11
VIM-207ENST00000495528 MYOZ2Q9NPC6 264 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 SFMBT1Q9UHJ3 866 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 TMA7Q9Y2S6 64 aaKnown RBP8.12□□□□□ -1.11
VIM-207ENST00000495528 LRRC37AA6NMS7 1700 aa8.12□□□□□ -1.11
VIM-207ENST00000495528 POLR2AP24928 1970 aaKnown RBP8.11□□□□□ -1.11
VIM-207ENST00000495528 UBE2Q2LH0YL09 131 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 AQP7O14520 342 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 PAX4O43316 350 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 CDC45O75419 566 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 PCCAP05165 728 aaPredicted RBP8.11□□□□□ -1.11
VIM-207ENST00000495528 ZNF853P0CG23 659 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 GRK2P25098 689 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 VIPR1P32241 457 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 GRK3P35626 688 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 FKBP1BP68106 108 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 SRSF3P84103 164 aaKnown RBP8.11□□□□□ -1.11
VIM-207ENST00000495528 WDR43Q15061 677 aaKnown RBP eCLIP8.11□□□□□ -1.11
VIM-207ENST00000495528 KIZQ2M2Z5 673 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 CCDC152Q4G0S7 254 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 TMC6Q7Z403 805 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 CCDC191Q8NCU4 936 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.11□□□□□ -1.11
VIM-207ENST00000495528 ALG1Q9BT22 464 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 MXD3Q9BW11 206 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 BCAS3Q9H6U6 928 aa8.11□□□□□ -1.11
VIM-207ENST00000495528 DDX60Q8IY21 1712 aaKnown RBP8.11□□□□□ -1.11
VIM-207ENST00000495528 H7BY64 318 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 SRGAP3O43295 1099 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 RASGRP1O95267 797 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 CRTAMO95727 393 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 SOD2P04179 222 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 SRGAP2CP0DJJ0 459 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 HSP90B1P14625 803 aaKnown RBP8.1□□□□□ -1.11
VIM-207ENST00000495528 PRR5P85299 388 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 NR1I3Q14994 352 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 PLEKHN1Q494U1 663 aaPredicted RBP8.1□□□□□ -1.11
VIM-207ENST00000495528 BRAPQ7Z569 592 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 ANKRD18AQ8IVF6 992 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 C8orf58Q8NAV2 365 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 CLUHP3Q96NS8 147 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 MRPL4Q9BYD3 311 aaKnown RBP8.1□□□□□ -1.11
VIM-207ENST00000495528 CWC25Q9NXE8 425 aaPredicted RBP8.1□□□□□ -1.11
VIM-207ENST00000495528 X6R8D5 127 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 SCN9AQ15858 1988 aa8.1□□□□□ -1.11
VIM-207ENST00000495528 XDHP47989 1333 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.09□□□□□ -1.11
VIM-207ENST00000495528 TM4SF4P48230 202 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 TKFCQ3LXA3 575 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 DACT2Q5SW24 774 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 MROH9Q5TGP6 573 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 ZC3H14Q6PJT7 736 aaKnown RBP8.09□□□□□ -1.11
VIM-207ENST00000495528 FGD2Q7Z6J4 655 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 NETO2Q8NC67 525 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 TTLL11Q8NHH1 800 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 SGPP1Q9BX95 441 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 CDIP1Q9H305 208 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 IPPKQ9H8X2 491 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 SIRT5Q9NXA8 310 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 NUDT5Q9UKK9 219 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 HDAC9Q9UKV0 1011 aa8.09□□□□□ -1.11
VIM-207ENST00000495528 MYOCOSA0A1B0GUC4 107 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 WNT10BO00744 389 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 APAF1O14727 1248 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 PLD2O14939 933 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 EFCAB14O75071 495 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 IGKV5-2P06315 115 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 COL6A2P12110 1019 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 MAPKAPK2P49137 400 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 CTSWP56202 376 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 YBX1P67809 324 aaKnown RBP8.08□□□□□ -1.12
VIM-207ENST00000495528 TMEM62Q0P6H9 643 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 TCEA2Q15560 299 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 PKN2Q16513 984 aaKnown RBP8.08□□□□□ -1.12
VIM-207ENST00000495528 C16orf86Q6ZW13 317 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 Q8N1Y9 231 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 FBXO15Q8NCQ5 510 aaPredicted RBP8.08□□□□□ -1.12
VIM-207ENST00000495528 PEX11GQ96HA9 241 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 MAGEB10Q96LZ2 347 aaPredicted RBP8.08□□□□□ -1.12
VIM-207ENST00000495528 CDC5LQ99459 802 aaKnown RBP8.08□□□□□ -1.12
VIM-207ENST00000495528 R3HDMLQ9H3Y0 253 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 GREM2Q9H772 168 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 IFT57Q9NWB7 429 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 MAP3K2Q9Y2U5 619 aa8.08□□□□□ -1.12
VIM-207ENST00000495528 ZNF609O15014 1411 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms