RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MLXIPLQ9NP71 852 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 ABCB11O95342 1321 aa17.55■□□□□ 0.4
COL7A1-210ENST00000487017 ARL13BQ3SXY8 428 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 RNF25Q96BH1 459 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 LRRC37BQ96QE4 947 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 FEM1BQ9UK73 627 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 ZNF335Q9H4Z2 1342 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 SRGNP10124 158 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 HSPA8P11142 646 aaKnown RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 Q3C1V9 767 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 ZNF746Q6NUN9 644 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 TRIM9Q9C026 710 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 NARFQ9UHQ1 456 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 APOBEC2Q9Y235 224 aaKnown RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 CLDN3O15551 220 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 PPFIA2O75334 1257 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 USP11P51784 963 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 THNSL1Q8IYQ7 743 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 IGDCC4Q8TDY8 1250 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 FAM96AQ9H5X1 160 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 ADGRB3O60242 1522 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 GOLGA8MH3BSY2 632 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 PPP1R12AO14974 1030 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 ZNF185O15231 689 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 DNAJC8O75937 253 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 HAUS5O94927 633 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 QRICH1Q2TAL8 776 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 PPP6R3Q5H9R7 873 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 NBPF10Q6P3W6 841 aaKnown RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 TRIM59Q8IWR1 403 aa17.54■□□□□ 0.4
COL7A1-210ENST00000487017 TTC7AQ9ULT0 858 aaPredicted RBP17.54■□□□□ 0.4
COL7A1-210ENST00000487017 GSTA4O15217 222 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 KRT76Q01546 638 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 TAF1BQ53T94 588 aaPredicted RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 HP1BP3Q5SSJ5 553 aaPredicted RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 DPY19L2Q6NUT2 758 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 KLC3Q6P597 504 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 ZC3H18Q86VM9 953 aaKnown RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 PARP9Q8IXQ6 854 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 ATP8B3O60423 1300 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 P4HBP07237 508 aaKnown RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 ZNF710Q8N1W2 664 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 PPP1R16BQ96T49 567 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 ECT2Q9H8V3 914 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 ABCF3Q9NUQ8 709 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 STOML1Q9UBI4 398 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 IP6K2Q9UHH9 426 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 DENND3A2RUS2 1198 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 TBXAS1P24557 533 aaPredicted RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 PDIA5Q14554 519 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 RMDN3Q96TC7 470 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 UPF3AQ9H1J1 476 aaKnown RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 CFAP73A6NFT4 308 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 APOEP02649 317 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 MARK3P27448 753 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 CYP2C19P33261 490 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 GUCY1A3Q02108 690 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 TRIM28Q13263 835 aaKnown RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 TC2NQ8N9U0 490 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 NEDD1Q8NHV4 660 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 CCDC138Q96M89 665 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 KIF9Q9HAQ2 790 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 UBE4BO95155 1302 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 FOXD4Q12950 439 aaPredicted RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 ZNF699Q32M78 642 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 FAM182BQ5T319 152 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 DHX38Q92620 1227 aaKnown RBP17.53■□□□□ 0.4
COL7A1-210ENST00000487017 PLA2G12BQ9BX93 195 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 AMACRQ9UHK6 382 aa17.53■□□□□ 0.4
COL7A1-210ENST00000487017 KRT14P02533 472 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 FSCBQ5H9T9 825 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 TSC22D3Q99576 134 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 NBPF26B4DH59 902 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 NBPF15Q8N660 670 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 EIF2AK1Q9BQI3 630 aaKnown RBP17.52■□□□□ 0.4
COL7A1-210ENST00000487017 CYP26B1Q9NR63 512 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 PDXKO00764 312 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 TRIM67Q6ZTA4 783 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 RHOT1Q8IXI2 618 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 OR6B3Q8NGW1 331 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 MASTLQ96GX5 879 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 RNPC3Q96LT9 517 aaKnown RBP17.52■□□□□ 0.4
COL7A1-210ENST00000487017 AP5M1Q9H0R1 490 aa17.52■□□□□ 0.4
COL7A1-210ENST00000487017 CPSF3Q9UKF6 684 aaKnown RBP17.52■□□□□ 0.4
COL7A1-210ENST00000487017 FAM205CA6NFA0 338 aa17.52■□□□□ 0.39
COL7A1-210ENST00000487017 QARSP47897 775 aaKnown RBP17.52■□□□□ 0.39
COL7A1-210ENST00000487017 FXR1P51114 621 aaKnown RBP eCLIP17.52■□□□□ 0.39
COL7A1-210ENST00000487017 ARHGAP27Q6ZUM4 889 aa17.52■□□□□ 0.39
COL7A1-210ENST00000487017 FAM84BQ96KN1 310 aaPredicted RBP17.52■□□□□ 0.39
COL7A1-210ENST00000487017 ANLNQ9NQW6 1124 aa17.52■□□□□ 0.39
COL7A1-210ENST00000487017 TYW5A2RUC4 315 aaKnown RBP17.52■□□□□ 0.39
COL7A1-210ENST00000487017 XPAP23025 273 aaPredicted RBP17.52■□□□□ 0.39
COL7A1-210ENST00000487017 SFNP31947 248 aa17.52■□□□□ 0.39
COL7A1-210ENST00000487017 DEUP1Q05D60 604 aa17.52■□□□□ 0.39
COL7A1-210ENST00000487017 LRRC14Q15048 493 aa17.52■□□□□ 0.39
COL7A1-210ENST00000487017 RHOBTB3O94955 611 aa17.51■□□□□ 0.39
COL7A1-210ENST00000487017 GPS1Q13098 491 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms