RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CDCA2Q69YH5 1023 aaPredicted RBP13.48□□□□□ -0.25
SDC1-206ENST00000482879 SASS6Q6UVJ0 657 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 STXBP4Q6ZWJ1 553 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 SRGAP1Q7Z6B7 1085 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 TRIML1Q8N9V2 468 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 KIAA0895Q8NCT3 520 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 TMEM161BQ8NDZ6 487 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 GLIS3Q8NEA6 775 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 HTATIP2Q9BUP3 242 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 NOC4LQ9BVI4 516 aaKnown RBP13.48□□□□□ -0.25
SDC1-206ENST00000482879 NFKBIZQ9BYH8 718 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 FGFBP2Q9BYJ0 223 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 GTPBP4Q9BZE4 634 aaKnown RBP13.48□□□□□ -0.25
SDC1-206ENST00000482879 INO80BQ9C086 356 aaPredicted RBP13.48□□□□□ -0.25
SDC1-206ENST00000482879 HIPK3Q9H422 1215 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 ARHGAP28Q9P2N2 729 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 TBX21Q9UL17 535 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 GDAQ9Y2T3 454 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 PCDHB13Q9Y5F0 798 aa13.48□□□□□ -0.25
SDC1-206ENST00000482879 SCN5AQ14524 2016 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 INO80B-WBP1J3KQ70 363 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 PITPNM1O00562 1244 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 CSDE1O75534 798 aaKnown RBP13.47□□□□□ -0.25
SDC1-206ENST00000482879 PRPF6O94906 941 aaKnown RBP13.47□□□□□ -0.25
SDC1-206ENST00000482879 DARSP14868 501 aaKnown RBP13.47□□□□□ -0.25
SDC1-206ENST00000482879 EIF4BP23588 611 aaKnown RBP13.47□□□□□ -0.25
SDC1-206ENST00000482879 CASP5P51878 434 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 NLRP12P59046 1061 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 GTF2BQ00403 316 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 ALCAMQ13740 583 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 ZSCAN23Q3MJ62 389 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 LRRC8DQ7L1W4 858 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 IFNLR1Q8IU57 520 aaPredicted RBP13.47□□□□□ -0.25
SDC1-206ENST00000482879 SMYD4Q8IYR2 804 aaPredicted RBP13.47□□□□□ -0.25
SDC1-206ENST00000482879 PPP1R12CQ9BZL4 782 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 GZF1Q9H116 711 aaPredicted RBP13.47□□□□□ -0.25
SDC1-206ENST00000482879 ST6GALNAC4Q9H4F1 302 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 TMEM134Q9H6X4 195 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 MINDY3Q9H8M7 445 aa13.47□□□□□ -0.25
SDC1-206ENST00000482879 PRDM5Q9NQX1 630 aaPredicted RBP13.47□□□□□ -0.25
SDC1-206ENST00000482879 TET1Q8NFU7 2136 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 UMODL1Q5DID0 1318 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 PHLPP2Q6ZVD8 1323 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 SYCE3A1L190 88 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 KIAA0355O15063 1070 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 EIF3DO15371 548 aaKnown RBP eCLIP13.46□□□□□ -0.258e-8■■■■□ 24.5
SDC1-206ENST00000482879 PPP1R37O75864 691 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 PRKCBP05771 671 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 IQCF3P0C7M6 154 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 BMP6P22004 513 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 SCP2P22307 547 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 CYP2C18P33260 490 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 ABCD1P33897 745 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 MBTD1Q05BQ5 628 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 STRN3Q13033 797 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 MAPK6Q16659 721 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 FBXO47Q5MNV8 452 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 L1TD1Q5T7N2 865 aaKnown RBP13.46□□□□□ -0.25
SDC1-206ENST00000482879 TRAF7Q6Q0C0 670 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 EPM2AIP1Q7L775 607 aaPredicted RBP13.46□□□□□ -0.25
SDC1-206ENST00000482879 MYOCDQ8IZQ8 938 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 ZNF507Q8TCN5 953 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 TMEM40Q8WWA1 233 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 ACCSQ96QU6 501 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 STRA6Q9BX79 667 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 FZD8Q9H461 694 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 TBX20Q9UMR3 447 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 MAPK8IP1Q9UQF2 711 aa13.46□□□□□ -0.25
SDC1-206ENST00000482879 NOC2LQ9Y3T9 749 aaKnown RBP13.46□□□□□ -0.25
SDC1-206ENST00000482879 TANC1Q9C0D5 1861 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 TRIM43BA6NCK2 446 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 EVI5O60447 810 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 RPS6KA5O75582 802 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 KIF20AO95235 890 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 GHRP10912 638 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 RAG1P15918 1043 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 FGFR4P22455 802 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 PRCPP42785 496 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 CCL23P55773 120 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 STIM1Q13586 685 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 TAS1R3Q7RTX0 852 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 CATSPER4Q7RTX7 472 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 NELFCDQ8IXH7 590 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 C7orf61Q8IZ16 206 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 SYCP3Q8IZU3 236 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 SCFD1Q8WVM8 642 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 DPF3Q92784 378 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 KCNN1Q92952 543 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 TRIM43Q96BQ3 446 aaPredicted RBP13.45□□□□□ -0.26
SDC1-206ENST00000482879 HVCN1Q96D96 273 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 OSBPL7Q9BZF2 842 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 CCDC113Q9H0I3 377 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 PRMT7Q9NVM4 692 aaPredicted RBP13.45□□□□□ -0.26
SDC1-206ENST00000482879 ANO10Q9NW15 660 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 PRKAG2Q9UGJ0 569 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 SQORQ9Y6N5 450 aa13.45□□□□□ -0.26
SDC1-206ENST00000482879 UBE4BO95155 1302 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 ACKR2O00590 384 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 ERLIN2O94905 339 aa13.44□□□□□ -0.26
SDC1-206ENST00000482879 TIMP1P01033 207 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms