RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SPDYE6P0CI01 402 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 SERPINB9P50453 376 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 PRPF18Q99633 342 aaKnown RBP14.12□□□□□ -0.15
COL6A3-209ENST00000472056 LRRC4Q9HBW1 653 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 SLC24A3Q9HC58 644 aa14.12□□□□□ -0.15
COL6A3-209ENST00000472056 UBE2TQ9NPD8 197 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-209ENST00000472056 CPSF1Q10570 1443 aaKnown RBP14.12□□□□□ -0.15
COL6A3-209ENST00000472056 NR1H4Q96RI1 486 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-209ENST00000472056 RANBP17Q9H2T7 1088 aaKnown RBP14.12□□□□□ -0.15
COL6A3-209ENST00000472056 MAGEA13PA6NCF6 341 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 PPIP5K2O43314 1243 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 LRRN2O75325 713 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 SF3A3Q12874 501 aaKnown RBP eCLIP14.11□□□□□ -0.15
COL6A3-209ENST00000472056 BRD8Q9H0E9 1235 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 ASCC2Q9H1I8 757 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-209ENST00000472056 AP3M2P53677 418 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 SLC7A5Q01650 507 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 TMEM191CA6NGB0 347 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 EIF2S1P05198 315 aaKnown RBP14.11□□□□□ -0.15
COL6A3-209ENST00000472056 KMT5AQ9NQR1 393 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 MAP3K15Q6ZN16 1313 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 LSP1P33241 339 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 CENPPQ6IPU0 288 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 MCUQ8NE86 351 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 EMILIN3Q9NT22 766 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 SCN3BQ9NY72 215 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 CAB39Q9Y376 341 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-209ENST00000472056 PREX2Q70Z35 1606 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 KIAA1210Q9ULL0 1709 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 IMPG1Q17R60 797 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 TRIM16LQ309B1 348 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 MAEAQ7L5Y9 396 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 AP3B2Q13367 1082 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 SLC39A6Q13433 755 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 P3H1Q32P28 736 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 RCSD1Q6JBY9 416 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 FAM89AQ96GI7 184 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 GINS4Q9BRT9 223 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 TUBGCP4Q9UGJ1 667 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 STX3Q13277 289 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 KBTBD12Q3ZCT8 623 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 PPP6R3Q5H9R7 873 aaPredicted RBP14.11□□□□□ -0.15
COL6A3-209ENST00000472056 PASD1Q8IV76 773 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 FAM9CQ8IZT9 166 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 KRT35Q92764 455 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 CATSPER2Q96P56 530 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 USP44Q9H0E7 712 aa14.11□□□□□ -0.15
COL6A3-209ENST00000472056 JAK3P52333 1124 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 SLC26A7Q8TE54 656 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 ZFRQ96KR1 1074 aaKnown RBP14.1□□□□□ -0.15
COL6A3-209ENST00000472056 HDLBPQ00341 1268 aaKnown RBP14.1□□□□□ -0.15
COL6A3-209ENST00000472056 SIX6OS1Q8N1H7 587 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 MCPH1Q8NEM0 835 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 ANKRD7Q92527 254 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 MLXIPQ9HAP2 919 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-209ENST00000472056 APPL1Q9UKG1 709 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 KCNQ4P56696 695 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 MECOMQ03112 1051 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 IQGAP3Q86VI3 1631 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 GOLGA8FQ08AF8 430 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 GOLGA8DPQ0D2H9 430 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 RHOT1Q8IXI2 618 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 DCLK2Q8N568 766 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 RFFLQ8WZ73 363 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 STAMQ92783 540 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 SIKE1Q9BRV8 207 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 ATP10BO94823 1461 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 FTCDO95954 541 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 POLD1P28340 1107 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 MAP3K19Q56UN5 1328 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 TJAP1Q5JTD0 557 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 DDX39AO00148 427 aaKnown RBP14.1□□□□□ -0.15
COL6A3-209ENST00000472056 RABGAP1LQ5R372 815 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 HDDC2Q7Z4H3 204 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 TMEM35BQ8NCS4 154 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 CNGB3Q9NQW8 809 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 ZAP70P43403 619 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 ZNF827Q17R98 1081 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 PAGE5Q96GU1 130 aa14.1□□□□□ -0.15
COL6A3-209ENST00000472056 OLA1Q9NTK5 396 aaKnown RBP14.1□□□□□ -0.15
COL6A3-209ENST00000472056 KIAA0391O15091 583 aaKnown RBP14.09□□□□□ -0.15
COL6A3-209ENST00000472056 BBS9Q3SYG4 887 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 ZNF577Q9BSK1 485 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 TIPINQ9BVW5 301 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 CCDC90BQ9GZT6 254 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 ANAPC7Q9UJX3 599 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 KRT72Q14CN4 511 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 ELOA2Q8IYF1 753 aaPredicted RBP14.09□□□□□ -0.15
COL6A3-209ENST00000472056 BEGAINQ9BUH8 593 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 PVALEFA0A1B0GWK0 134 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 PLCG1P19174 1290 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 ADD1P35611 737 aaKnown RBP14.09□□□□□ -0.15
COL6A3-209ENST00000472056 KCNB1Q14721 858 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 ADCK5Q3MIX3 580 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 LRRC8EQ6NSJ5 796 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 SUCLG2Q96I99 432 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 PLEKHA4Q9H4M7 779 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 DCLRE1BQ9H816 532 aa14.09□□□□□ -0.15
COL6A3-209ENST00000472056 SAC3D1A6NKF1 404 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms