RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 DGKIO75912 1065 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 ERLIN2O94905 339 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 AXLP30530 894 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 ANP32AP39687 249 aaKnown RBP16.91■□□□□ 0.3
SDC3-203ENST00000471567 MBTD1Q05BQ5 628 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 NCBP1Q09161 790 aaKnown RBP16.91■□□□□ 0.3
SDC3-203ENST00000471567 PPP2R2DQ66LE6 453 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 CCDC73Q6ZRK6 1079 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 ZBTB8OSQ8IWT0 167 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 DEPTORQ8TB45 409 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 BSNDQ8WZ55 320 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 LARP4BQ92615 738 aaKnown RBP16.91■□□□□ 0.3
SDC3-203ENST00000471567 TMEM161AQ9NX61 479 aa16.91■□□□□ 0.3
SDC3-203ENST00000471567 PIN4Q9Y237 131 aaKnown RBP16.91■□□□□ 0.3
SDC3-203ENST00000471567 GBF1Q92538 1859 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 EOMESO95936 686 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 SKIP12755 728 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 ME1P48163 572 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 TAP1Q03518 808 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 MAPK7Q13164 816 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 MCM6Q14566 821 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 AXDND1Q5T1B0 1012 aaPredicted RBP16.9■□□□□ 0.3
SDC3-203ENST00000471567 PPP4R3CPQ6ZMV5 832 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 Q7L0L9 218 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 GPBP1Q86WP2 473 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 ECHDC2Q86YB7 292 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 DAW1Q8N136 415 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 LRRC15Q8TF66 581 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 ZNF689Q96CS4 500 aaPredicted RBP16.9■□□□□ 0.3
SDC3-203ENST00000471567 CCDC51Q96ER9 411 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 PRIMPOLQ96LW4 560 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 RC3H2Q9HBD1 1191 aaKnown RBP16.9■□□□□ 0.3
SDC3-203ENST00000471567 MTMR10Q9NXD2 777 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 PCDHA7Q9UN72 937 aa16.9■□□□□ 0.3
SDC3-203ENST00000471567 COL4A6Q14031 1691 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 LCHNA4D1U4 455 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 HOXA11P31270 313 aaPredicted RBP16.89■□□□□ 0.29
SDC3-203ENST00000471567 RAB27AP51159 221 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 EFNA5P52803 228 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 DMP1Q13316 513 aaPredicted RBP16.89■□□□□ 0.29
SDC3-203ENST00000471567 AMHR2Q16671 573 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 FAM187BQ17R55 369 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 ARSHQ5FYA8 562 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 TWF2Q6IBS0 349 aaKnown RBP16.89■□□□□ 0.29
SDC3-203ENST00000471567 SHC4Q6S5L8 630 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 LEO1Q8WVC0 666 aaPredicted RBP16.89■□□□□ 0.29
SDC3-203ENST00000471567 NTPCRQ9BSD7 190 aaKnown RBP16.89■□□□□ 0.29
SDC3-203ENST00000471567 SCAND2PQ9GZW5 306 aaPredicted RBP16.89■□□□□ 0.29
SDC3-203ENST00000471567 FZD8Q9H461 694 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 POLD4Q9HCU8 107 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 PRMT7Q9NVM4 692 aaPredicted RBP16.89■□□□□ 0.29
SDC3-203ENST00000471567 ODF2LQ9ULJ1 636 aa16.89■□□□□ 0.29
SDC3-203ENST00000471567 LINC01553A4QN01 128 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 HOXA2O43364 376 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 TSPAN1O60635 241 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 ZNF623O75123 536 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 NCLP19338 710 aaKnown RBP16.88■□□□□ 0.29
SDC3-203ENST00000471567 STAT6P42226 847 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 NPTX2P47972 431 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 DHX8Q14562 1220 aaKnown RBP16.88■□□□□ 0.29
SDC3-203ENST00000471567 MAPK6Q16659 721 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 NAALADL2Q58DX5 795 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 ZNF598Q86UK7 904 aaKnown RBP16.88■□□□□ 0.29
SDC3-203ENST00000471567 CMTR2Q8IYT2 770 aaKnown RBP16.88■□□□□ 0.29
SDC3-203ENST00000471567 SPIRE2Q8WWL2 714 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 SPATA32Q96LK8 384 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 FAM105AQ9NUU6 356 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 CIZ1Q9ULV3 898 aaPredicted RBP16.88■□□□□ 0.29
SDC3-203ENST00000471567 RBM19Q9Y4C8 960 aaKnown RBP16.88■□□□□ 0.29
SDC3-203ENST00000471567 LAMA2P24043 3122 aaKnown RBP16.88■□□□□ 0.29
SDC3-203ENST00000471567 PHLPP2Q6ZVD8 1323 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 ADGRA3Q8IWK6 1321 aa16.88■□□□□ 0.29
SDC3-203ENST00000471567 CCDC169A6NNP5 214 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 ARHGEF15O94989 841 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 PLS3P13797 630 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 PEX3P56589 373 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 ERVK-21P61565 698 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 GRIN2CQ14957 1233 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 NOTUMQ6P988 496 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 SV2BQ7L1I2 683 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 FIBCD1Q8N539 461 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 RSPH1Q8WYR4 309 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 FAM161BQ96MY7 647 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 SAMD11Q96NU1 681 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 TGS1Q96RS0 853 aaKnown RBP16.87■□□□□ 0.29
SDC3-203ENST00000471567 PANK2Q9BZ23 570 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 CCDC113Q9H0I3 377 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 CUEDC2Q9H467 287 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 TMEM134Q9H6X4 195 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 FAM13BQ9NYF5 915 aa16.87■□□□□ 0.29
SDC3-203ENST00000471567 LARSQ9P2J5 1176 aaKnown RBP16.87■□□□□ 0.29
SDC3-203ENST00000471567 A0A087X0B3 334 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 NPHP3-ACAD11A0A0J9YXS1 232 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 A0A1B0GUA9 196 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 SFI1A8K8P3 1242 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 K7ERI5 159 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 ACKR2O00590 384 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 PRKCBP05771 671 aa16.86■□□□□ 0.29
SDC3-203ENST00000471567 KRT18P05783 430 aaKnown RBP16.86■□□□□ 0.29
SDC3-203ENST00000471567 ARF4P18085 180 aaPredicted RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms