RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 MYCT1Q8N699 235 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 RASSF8Q8NHQ8 419 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 SLC7A3Q8WY07 619 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 TRIM43Q96BQ3 446 aaPredicted RBP10.92□□□□□ -0.66
SF3A1-207ENST00000471342 ABHD8Q96I13 439 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 TOX2Q96NM4 488 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 RBSNQ9H1K0 784 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 TMX1Q9H3N1 280 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 TMEM134Q9H6X4 195 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 TBX20Q9UMR3 447 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 MAPK8IP1Q9UQF2 711 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 TRAF3IP3Q9Y228 551 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 COL4A3BPQ9Y5P4 624 aa10.92□□□□□ -0.66
SF3A1-207ENST00000471342 MYH9P35579 1960 aaKnown RBP10.92□□□□□ -0.66
SF3A1-207ENST00000471342 SIP14410 1827 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 FSD2A1L4K1 749 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 TRIM49BA6NDI0 452 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 KBTBD13C9JR72 458 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 EIF3DO15371 548 aaKnown RBP eCLIP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 ASAP2O43150 1006 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 NBNO60934 754 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 CKBP12277 381 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 IDEP14735 1019 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 DARSP14868 501 aaKnown RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 ZNF18P17022 549 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 FGFR4P22455 802 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 ATN1P54259 1190 aaPredicted RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 NLRP11P59045 1033 aaKnown RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 TMEM62Q0P6H9 643 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 DSC3Q14574 896 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 PTGISQ16647 500 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 KIZQ2M2Z5 673 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 L1TD1Q5T7N2 865 aaKnown RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 SCARA3Q6AZY7 606 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 FOXR2Q6PJQ5 311 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 CRELD2Q6UXH1 353 aaPredicted RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 FAM228AQ86W67 206 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 CCDC65Q8IXS2 484 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 NME8Q8N427 588 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 RNF149Q8NC42 400 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 PLEKHO2Q8TD55 490 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 PSPC1Q8WXF1 523 aaKnown RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 LINC01599Q8WXQ3 324 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 ZBTB45Q96K62 511 aaPredicted RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 DRC1Q96MC2 740 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 NOC4LQ9BVI4 516 aaKnown RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 CELF4Q9BZC1 486 aaKnown RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 LRRC27Q9C0I9 530 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 DNAJC25Q9H1X3 360 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 CXCL16Q9H2A7 254 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 C11orf49Q9H6J7 331 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 ERVK-5Q9HDB9 667 aa10.91□□□□□ -0.66
SF3A1-207ENST00000471342 NOC2LQ9Y3T9 749 aaKnown RBP10.91□□□□□ -0.66
SF3A1-207ENST00000471342 DENND3A2RUS2 1198 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 MGEA5O60502 916 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 TSPAN1O60635 241 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 FAM13AO94988 1023 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 SMC2O95347 1197 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 MYCNP04198 464 aaPredicted RBP10.9□□□□□ -0.66
SF3A1-207ENST00000471342 SRGAP2CP0DJJ0 459 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 CAPN2P17655 700 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 MRPS6P82932 125 aaKnown RBP10.9□□□□□ -0.66
SF3A1-207ENST00000471342 MXD4Q14582 209 aaPredicted RBP10.9□□□□□ -0.66
SF3A1-207ENST00000471342 LPIN1Q14693 890 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 NFIL3Q16649 462 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 FBXO47Q5MNV8 452 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 ZBTB41Q5SVQ8 909 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 C1orf220Q5T0J3 134 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 TAF2Q6P1X5 1199 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 RHPN2Q8IUC4 686 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 C12orf56Q8IXR9 622 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 METTL13Q8N6R0 699 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 MLKLQ8NB16 471 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 TCP11Q8WWU5 503 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 FBXL18Q96ME1 805 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 PPP1R16BQ96T49 567 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 BPIFA3Q9BQP9 254 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 FAM49AQ9H0Q0 323 aaPredicted RBP10.9□□□□□ -0.66
SF3A1-207ENST00000471342 CBX8Q9HC52 389 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 LARSQ9P2J5 1176 aaKnown RBP10.9□□□□□ -0.66
SF3A1-207ENST00000471342 CDY2AQ9Y6F7 541 aa10.9□□□□□ -0.66
SF3A1-207ENST00000471342 ACKR2O00590 384 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 KIAA0355O15063 1070 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 CXCL10P02778 98 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 CRYBB1P53674 252 aaPredicted RBP10.89□□□□□ -0.67
SF3A1-207ENST00000471342 CHMP4BP1P59074 171 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 KNOP1Q1ED39 458 aaKnown RBP10.89□□□□□ -0.67
SF3A1-207ENST00000471342 ANO6Q4KMQ2 910 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 CDKAL1Q5VV42 579 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 DPY19L2P1Q6NXN4 242 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 C16orf59Q7L2K0 433 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 ZNF410Q86VK4 478 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 FAM178BQ8IXR5 827 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 OSMRQ99650 979 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 ACO2Q99798 780 aaKnown RBP10.89□□□□□ -0.67
SF3A1-207ENST00000471342 JPH2Q9BR39 696 aaPredicted RBP10.89□□□□□ -0.67
SF3A1-207ENST00000471342 CBWD1Q9BRT8 395 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 TARS2Q9BW92 718 aaKnown RBP10.89□□□□□ -0.67
SF3A1-207ENST00000471342 SEZ6LQ9BYH1 1024 aa10.89□□□□□ -0.67
SF3A1-207ENST00000471342 MRPL44Q9H9J2 332 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms