RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CCDC169A6NNP5 214 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 MGEA5O60502 916 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 FAM13AO94988 1023 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 AMHP03971 560 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 PLS3P13797 630 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 ATP2A2P16615 1042 aaKnown RBP13.2□□□□□ -0.3
VPS13D-204ENST00000469054 ZSCAN20P17040 1043 aaPredicted RBP13.2□□□□□ -0.3
VPS13D-204ENST00000469054 NPTX2P47972 431 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 ZNF131P52739 623 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 DEFB103AP81534 67 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 AMPD3Q01432 767 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 DSC3Q14574 896 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 ZBTB8OSQ8IWT0 167 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 FSIP1Q8NA03 581 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 SPIRE2Q8WWL2 714 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 LINC01599Q8WXQ3 324 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 DDX12PQ92771 950 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 SLC9A7Q96T83 725 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 ADAM2Q99965 735 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 NTPCRQ9BSD7 190 aaKnown RBP13.2□□□□□ -0.3
VPS13D-204ENST00000469054 KIFC3Q9BVG8 833 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 LRRC27Q9C0I9 530 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 MAGEF1Q9HAY2 307 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 PARVGQ9HBI0 331 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 CHST12Q9NRB3 414 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 KBTBD4Q9NVX7 518 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 LARSQ9P2J5 1176 aaKnown RBP13.2□□□□□ -0.3
VPS13D-204ENST00000469054 EVPLQ92817 2033 aa13.2□□□□□ -0.3
VPS13D-204ENST00000469054 TET1Q8NFU7 2136 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 SCN5AQ14524 2016 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 DENND3A2RUS2 1198 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 GRXCR1A8MXD5 290 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 TBCAO75347 108 aaKnown RBP13.19□□□□□ -0.3
VPS13D-204ENST00000469054 ERLIN2O94905 339 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 SYKP43405 635 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 NDUFA8P51970 172 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 SMTNP53814 917 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 HABP4Q5JVS0 413 aaKnown RBP13.19□□□□□ -0.3
VPS13D-204ENST00000469054 FAM109BQ6ICB4 259 aaPredicted RBP13.19□□□□□ -0.3
VPS13D-204ENST00000469054 DYMQ7RTS9 669 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 CEP57L1Q8IYX8 460 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 MYOCDQ8IZQ8 938 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 MYCT1Q8N699 235 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 STAMQ92783 540 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 TOP1MTQ969P6 601 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 FZD8Q9H461 694 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 GOLPH3LQ9H4A5 285 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 ZHX3Q9H4I2 956 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 KMT5AQ9NQR1 393 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 RGS18Q9NS28 235 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 C1orf112Q9NSG2 853 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 AGPAT5Q9NUQ2 364 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 PRMT7Q9NVM4 692 aaPredicted RBP13.19□□□□□ -0.3
VPS13D-204ENST00000469054 ARHGAP28Q9P2N2 729 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 USP25Q9UHP3 1055 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 SERTAD1Q9UHV2 236 aa13.19□□□□□ -0.3
VPS13D-204ENST00000469054 PIN4Q9Y237 131 aaKnown RBP13.19□□□□□ -0.3
VPS13D-204ENST00000469054 ADGRA3Q8IWK6 1321 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 C9IYK1 514 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 ACTN4O43707 911 aaKnown RBP13.18□□□□□ -0.3
VPS13D-204ENST00000469054 TSPAN1O60635 241 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 SLFN14P0C7P3 912 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 AXLP30530 894 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 HOXA11P31270 313 aaPredicted RBP13.18□□□□□ -0.3
VPS13D-204ENST00000469054 EFNA5P52803 228 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 FAM189BP81408 668 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 NCBP1Q09161 790 aaKnown RBP13.18□□□□□ -0.3
VPS13D-204ENST00000469054 MAPK6Q16659 721 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 AMHR2Q16671 573 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 FAM187BQ17R55 369 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 LONRF3Q496Y0 759 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 SLC24A5Q71RS6 500 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 HERC6Q8IVU3 1022 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 TMEM87AQ8NBN3 555 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 DNAJC19Q96DA6 116 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 PRIMPOLQ96LW4 560 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 TMEM134Q9H6X4 195 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 DACT1Q9NYF0 836 aa13.18□□□□□ -0.3
VPS13D-204ENST00000469054 K7ERI5 159 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 ACKR2O00590 384 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 SLC16A4O15374 487 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 TRAK2O60296 914 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 ZNF202O95125 648 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 GJB5O95377 273 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 PRKCBP05771 671 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 SARSP49591 514 aaKnown RBP13.17□□□□□ -0.3
VPS13D-204ENST00000469054 SMAD3P84022 425 aaKnown RBP13.17□□□□□ -0.3
VPS13D-204ENST00000469054 TWF2Q6IBS0 349 aaKnown RBP13.17□□□□□ -0.3
VPS13D-204ENST00000469054 CLEC17AQ6ZS10 378 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 TMCO2Q7Z6W1 182 aaPredicted RBP13.17□□□□□ -0.3
VPS13D-204ENST00000469054 TMEM161BQ8NDZ6 487 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 KCNN1Q92952 543 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 PAGE5Q96GU1 130 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 C7orf25Q9BPX7 421 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 TRAIPQ9BWF2 469 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 TRIM9Q9C026 710 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 CCDC113Q9H0I3 377 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 ARID2Q68CP9 1835 aa13.17□□□□□ -0.3
VPS13D-204ENST00000469054 PHLPP2Q6ZVD8 1323 aa13.16□□□□□ -0.3
VPS13D-204ENST00000469054 A0A0U1RQF3 1178 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms