RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TYW1Q9NV66 732 aaKnown RBP13.36□□□□□ -0.27
SQSTM1-206ENST00000466342 VPS37CA5D8V6 355 aaPredicted RBP13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 TBKBP1A7MCY6 615 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 WNT7AO00755 349 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 HBP1O60381 514 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 SYT1P21579 422 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 TRAPPC10P48553 1259 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 SARSP49591 514 aaKnown RBP13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 IGBP1P78318 339 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 TDGQ13569 410 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 KIAA0319Q5VV43 1072 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 ZNF746Q6NUN9 644 aaPredicted RBP13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 MIS18BP1Q6P0N0 1132 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 SMAP1Q8IYB5 467 aaPredicted RBP13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 SIX5Q8N196 739 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 NME8Q8N427 588 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 ETNPPLQ8TBG4 499 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 SLC5A5Q92911 643 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 RIT2Q99578 217 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 KCNMB3Q9NPA1 279 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 TCEAL9Q9UHQ7 104 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 DBR1Q9UK59 544 aaKnown RBP13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 FBXL21Q9UKT6 434 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 NOL7Q9UMY1 257 aaKnown RBP13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 PCDHA2Q9Y5H9 948 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 HCFC2Q9Y5Z7 792 aa13.35□□□□□ -0.27
SQSTM1-206ENST00000466342 SPTBN2O15020 2390 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 SMIM35A0A1B0GVV1 85 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 DDX39AO00148 427 aaKnown RBP13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 STK25O00506 426 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 BACH1O14867 736 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 TBX3O15119 743 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 NEMFO60524 1076 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 PSMD10O75832 226 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 EOMESO95936 686 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 WEE2P0C1S8 567 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 ATXN1P54253 815 aaKnown RBP13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 KRT76Q01546 638 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 PAK2Q13177 524 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 ORC2Q13416 577 aaPredicted RBP13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 TTC38Q5R3I4 469 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 ATAT1Q5SQI0 421 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 FAM102BQ5T8I3 360 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 LRCH2Q5VUJ6 765 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 KIAA1841Q6NSI8 718 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 SWSAP1Q6NVH7 229 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 PDXDC2PQ6P474 469 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 FAM43BQ6ZT52 329 aaPredicted RBP13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 TMC7Q7Z402 723 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 POTEDQ86YR6 584 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 FAM20AQ96MK3 541 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 TEKT3Q9BXF9 490 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 TMX1Q9H3N1 280 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 CWH43Q9H720 699 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 ZNF302Q9NR11 478 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 DUSP12Q9UNI6 340 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 IGSF9BQ9UPX0 1349 aa13.34□□□□□ -0.27
SQSTM1-206ENST00000466342 CACNA1IQ9P0X4 2223 aa13.33□□□□□ -0.27
SQSTM1-206ENST00000466342 COL1A2P08123 1366 aa13.33□□□□□ -0.27
SQSTM1-206ENST00000466342 M0QZ92 97 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 STX6O43752 255 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 GAS7O60861 476 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 PSAPP07602 524 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 LAG3P18627 525 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 ATP2B1P20020 1258 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 IBSPP21815 317 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 KLRC1P26715 233 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 MCM7P33993 719 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 RILPL1Q5EBL4 403 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 ZNF484Q5JVG2 852 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 RARS2Q5T160 578 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 MTHFD1LQ6UB35 978 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 CCDC60Q8IWA6 550 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 SLFN12Q8IYM2 578 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 MRPL43Q8N983 215 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 SUMF1Q8NBK3 374 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 SPRYD3Q8NCJ5 442 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 TRAPPC12Q8WVT3 735 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 RIN2Q8WYP3 895 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 GJA10Q969M2 543 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 ACSF2Q96CM8 615 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 HCSTQ9UBK5 93 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 PCDHA10Q9Y5I2 948 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 MAFBQ9Y5Q3 323 aaPredicted RBP13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 TRPV2Q9Y5S1 764 aa13.33□□□□□ -0.28
SQSTM1-206ENST00000466342 C2orf16Q68DN1 1984 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 EVPLQ92817 2033 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 BAG4O95429 457 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 SP9P0CG40 484 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 PDIA4P13667 645 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 TOB1P50616 345 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 KRT17Q04695 432 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 TBC1D8BQ0IIM8 1120 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 CALCRLQ16602 461 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 B3GNT9Q6UX72 402 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 BRAPQ7Z569 592 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 CKAP2LQ8IYA6 745 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 GPR161Q8N6U8 529 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 BBXQ8WY36 941 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 HAS1Q92839 578 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms