RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-215	ENST00000464425	ECHDC2	Q86YB7	292 aa		18.87	■□□□□ 0.61
VPS52-215	ENST00000464425	BSND	Q8WZ55	320 aa		18.87	■□□□□ 0.61
VPS52-215	ENST00000464425	RUSC1	Q9BVN2	902 aa		18.87	■□□□□ 0.61
VPS52-215	ENST00000464425	NT5C3A	Q9H0P0	336 aa		18.87	■□□□□ 0.61
VPS52-215	ENST00000464425	CSRNP2	Q9H175	543 aa		18.87	■□□□□ 0.61
VPS52-215	ENST00000464425	RNF216	Q9NWF9	866 aa	Predicted RBP	18.87	■□□□□ 0.61
VPS52-215	ENST00000464425	TMEM161A	Q9NX61	479 aa		18.87	■□□□□ 0.61
VPS52-215	ENST00000464425	FBXO2	Q9UK22	296 aa	Predicted RBP	18.87	■□□□□ 0.61
VPS52-215	ENST00000464425	COL6A3	P12111	3177 aa		18.87	■□□□□ 0.61
VPS52-215	ENST00000464425		A0A0U1RQF3	1178 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	KRT85	P78386	507 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	MBTD1	Q05BQ5	628 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	POU5F1B	Q06416	359 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	KARS	Q15046	597 aa	Known RBP	18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	STK38	Q15208	465 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	TMEM119	Q4V9L6	283 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	EPC2	Q52LR7	807 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	RINT1	Q6NUQ1	792 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	TMEM192	Q8IY95	271 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	RASSF8	Q8NHQ8	419 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	CALML4	Q96GE6	196 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	EPSTI1	Q96J88	318 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	ELAC1	Q9H777	363 aa	Known RBP	18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	AGPAT5	Q9NUQ2	364 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	RCOR1	Q9UKL0	485 aa		18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	SRPRB	Q9Y5M8	271 aa	Known RBP	18.86	■□□□□ 0.61
VPS52-215	ENST00000464425	TBKBP1	A7MCY6	615 aa		18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	SPTLC2	O15270	562 aa		18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	ERLIN2	O94905	339 aa		18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	PLA2G4B	P0C869	781 aa		18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	HOXA11	P31270	313 aa	Predicted RBP	18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	LONRF3	Q496Y0	759 aa		18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	USP49	Q70CQ1	688 aa		18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	CMTR2	Q8IYT2	770 aa	Known RBP	18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	FBXO22	Q8NEZ5	403 aa		18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	MAFA	Q8NHW3	353 aa	Predicted RBP	18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	KCNG4	Q8TDN1	519 aa		18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	GDPD5	Q8WTR4	605 aa		18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	SCAND2P	Q9GZW5	306 aa	Predicted RBP	18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	MRPL42	Q9Y6G3	142 aa	Known RBP	18.85	■□□□□ 0.61
VPS52-215	ENST00000464425	TSPAN1	O60635	241 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	HIP1R	O75146	1068 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	SLC12A3	P55017	1021 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	RAD51AP2	Q09MP3	1159 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	DHX8	Q14562	1220 aa	Known RBP	18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	C1orf186	Q6ZWK4	172 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	IFNLR1	Q8IU57	520 aa	Predicted RBP	18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	SYT2	Q8N9I0	419 aa	Predicted RBP	18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	KRI1	Q8N9T8	703 aa	Known RBP	18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	LRRC15	Q8TF66	581 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	PPM1E	Q8WY54	764 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	KIFAP3	Q92845	792 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	CPB2	Q96IY4	423 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	IFT74	Q96LB3	600 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	KIFC3	Q9BVG8	833 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	NFKBIZ	Q9BYH8	718 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	FAM105A	Q9NUU6	356 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	RNF19A	Q9NV58	838 aa		18.84	■□□□□ 0.61
VPS52-215	ENST00000464425	SLC26A4	O43511	780 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	LPXN	O60711	386 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	LINC00271	P0C7V0	271 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	ATF7	P17544	494 aa	Predicted RBP	18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	LIG1	P18858	919 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	PLCG1	P19174	1290 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	CTNNB1	P35222	781 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	NCBP1	Q09161	790 aa	Known RBP	18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	CCDC85B	Q15834	202 aa	Predicted RBP	18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	ZNF598	Q86UK7	904 aa	Known RBP	18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	ZBTB8OS	Q8IWT0	167 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	MICALL1	Q8N3F8	863 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	KCTD17	Q8N5Z5	321 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	DEPTOR	Q8TB45	409 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	SYMPK	Q92797	1274 aa	Known RBP	18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	LPP	Q93052	612 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	SAMD11	Q96NU1	681 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	TRAIP	Q9BWF2	469 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	CCSER1	Q9C0I3	900 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	PCDHB2	Q9Y5E7	798 aa		18.83	■□□□□ 0.6
VPS52-215	ENST00000464425	NPHP3-ACAD11	A0A0J9YXS1	232 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	SFI1	A8K8P3	1242 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	B4GALT5	O43286	388 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	EOMES	O95936	686 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	NCL	P19338	710 aa	Known RBP	18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	BMPR1A	P36894	532 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	NAMPT	P43490	491 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	PPP2R5A	Q15172	486 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	PCBP1	Q15365	356 aa	Known RBP eCLIP	18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	AMHR2	Q16671	573 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	CLLU1OS	Q5K130	101 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	UBXN11	Q5T124	520 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	SPOUT1	Q5T280	376 aa	Known RBP	18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	CDCA2	Q69YH5	1023 aa	Predicted RBP	18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	ABI1	Q8IZP0	508 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	DAW1	Q8N136	415 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	LEO1	Q8WVC0	666 aa	Predicted RBP	18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	CLP1	Q92989	425 aa	Known RBP	18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	SPATA32	Q96LK8	384 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	CASD1	Q96PB1	797 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	TMEM117	Q9H0C3	514 aa		18.82	■□□□□ 0.6
VPS52-215	ENST00000464425	HCST	Q9UBK5	93 aa		18.82	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms