RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 RNF216Q9NWF9 866 aaPredicted RBP25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 DACT1Q9NYF0 836 aa25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 FAM13BQ9NYF5 915 aa25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 LRFN2Q9ULH4 789 aa25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 YBX2Q9Y2T7 364 aaKnown RBP25.26■■□□□ 1.63
CCDC28B-203ENST00000461819 A0A087X0B3 334 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 NPHP3-ACAD11A0A0J9YXS1 232 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 STAG3L1P0CL83 205 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 SARSP49591 514 aaKnown RBP25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 PEX3P56589 373 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 CACNB1Q02641 598 aaPredicted RBP25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 DMP1Q13316 513 aaPredicted RBP25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 PCBP1Q15365 356 aaKnown RBP eCLIP25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 CDCA2Q69YH5 1023 aaPredicted RBP25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 TWF2Q6IBS0 349 aaKnown RBP25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 NPAS4Q8IUM7 802 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 DAW1Q8N136 415 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 YME1L1Q96TA2 773 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 RAD9AQ99638 391 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 CHST12Q9NRB3 414 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 AGPAT5Q9NUQ2 364 aa25.25■■□□□ 1.63
CCDC28B-203ENST00000461819 CCDC169A6NNP5 214 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 NCBP1Q09161 790 aaKnown RBP25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 MAPK7Q13164 816 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 NAALADL2Q58DX5 795 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 ARSHQ5FYA8 562 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 ZNF697Q5TEC3 545 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 RESP18Q5W5W9 173 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 GPR153Q6NV75 609 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 SV2BQ7L1I2 683 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 REEP2Q9BRK0 252 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 KIFC3Q9BVG8 833 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 C17orf75Q9HAS0 396 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 SLC28A3Q9HAS3 691 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 ODF2LQ9ULJ1 636 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 INSL6Q9Y581 213 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 PCDHB7Q9Y5E2 793 aa25.24■■□□□ 1.63
CCDC28B-203ENST00000461819 C9IYK1 514 aa25.23■■□□□ 1.63
CCDC28B-203ENST00000461819 TSPAN1O60635 241 aa25.23■■□□□ 1.63
CCDC28B-203ENST00000461819 CA3P07451 260 aa25.23■■□□□ 1.63
CCDC28B-203ENST00000461819 LIG1P18858 919 aa25.23■■□□□ 1.63
CCDC28B-203ENST00000461819 PPP2R2DQ66LE6 453 aa25.23■■□□□ 1.63
CCDC28B-203ENST00000461819 GDPD2Q9HCC8 539 aa25.23■■□□□ 1.63
CCDC28B-203ENST00000461819 KMT5AQ9NQR1 393 aa25.23■■□□□ 1.63
CCDC28B-203ENST00000461819 SFI1A8K8P3 1242 aa25.22■■□□□ 1.63
CCDC28B-203ENST00000461819 TBCAO75347 108 aaKnown RBP25.22■■□□□ 1.63
CCDC28B-203ENST00000461819 FAM13AO94988 1023 aa25.22■■□□□ 1.63
CCDC28B-203ENST00000461819 NPTX2P47972 431 aa25.22■■□□□ 1.63
CCDC28B-203ENST00000461819 EFNA5P52803 228 aa25.22■■□□□ 1.63
CCDC28B-203ENST00000461819 MAPK6Q16659 721 aa25.22■■□□□ 1.63
CCDC28B-203ENST00000461819 DHX58Q96C10 678 aa25.22■■□□□ 1.63
CCDC28B-203ENST00000461819 ZHX3Q9H4I2 956 aa25.22■■□□□ 1.63
CCDC28B-203ENST00000461819 PRMT7Q9NVM4 692 aaPredicted RBP25.22■■□□□ 1.63
CCDC28B-203ENST00000461819 FNDC1Q4ZHG4 1894 aaPredicted RBP25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 NLRC5Q86WI3 1866 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 ADGRA3Q8IWK6 1321 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 TMEM265A0A087WTH1 108 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 LCHNA4D1U4 455 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 PLS3P13797 630 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 AXLP30530 894 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 HTRA4P83105 476 aaPredicted RBP25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 TMEM132AQ24JP5 1023 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 TPRNQ4KMQ1 711 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 ADALQ6DHV7 355 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 IQUBQ8NA54 791 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 RNF169Q8NCN4 708 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 CUEDC2Q9H467 287 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 CHMP5Q9NZZ3 219 aa25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 LARSQ9P2J5 1176 aaKnown RBP25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 RBM19Q9Y4C8 960 aaKnown RBP25.21■■□□□ 1.63
CCDC28B-203ENST00000461819 SZT2Q5T011 3432 aa25.2■■□□□ 1.63
CCDC28B-203ENST00000461819 PRKCBP05771 671 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 SMTNP53814 917 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 NOTUMQ6P988 496 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 DYMQ7RTS9 669 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 ECHDC2Q86YB7 292 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 CPB2Q96IY4 423 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 PRIMPOLQ96LW4 560 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 TSHZ2Q9NRE2 1034 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 TMEM161AQ9NX61 479 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 KCNG1Q9UIX4 513 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 COL4A6Q14031 1691 aa25.2■■□□□ 1.62
CCDC28B-203ENST00000461819 PHLPP2Q6ZVD8 1323 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 A0A0U1RQF3 1178 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 POLR2DO15514 142 aaKnown RBP25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 B4GALT5O43286 388 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 DGKIO75912 1065 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 SKIP12755 728 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 HOXA11P31270 313 aaPredicted RBP25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 RAB27AP51159 221 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 GIT2Q14161 759 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 E2F4Q16254 413 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 AMHR2Q16671 573 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 PPP4R3CPQ6ZMV5 832 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 Q7L0L9 218 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 FAM161BQ96MY7 647 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 PYM1Q9BRP8 204 aaKnown RBP25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 CCDC113Q9H0I3 377 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 FZD8Q9H461 694 aa25.19■■□□□ 1.62
CCDC28B-203ENST00000461819 ZNF576Q9H609 170 aa25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms