RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 RRP15Q9Y3B9 282 aaKnown RBP17.36■□□□□ 0.37
SHQ1-202ENST00000444040 MYH11P35749 1972 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 LRRN2O75325 713 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 TNFAIP3P21580 790 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 KCNA3P22001 575 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 VAMP7P51809 220 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 IRX5P78411 483 aaPredicted RBP17.36■□□□□ 0.37
SHQ1-202ENST00000444040 SF3B2Q13435 895 aaKnown RBP17.36■□□□□ 0.37
SHQ1-202ENST00000444040 TNIP1Q15025 636 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 SYTL5Q8TDW5 730 aaPredicted RBP17.36■□□□□ 0.37
SHQ1-202ENST00000444040 ACCSQ96QU6 501 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 THAP2Q9H0W7 228 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 ZNRF3Q9ULT6 936 aa17.36■□□□□ 0.37
SHQ1-202ENST00000444040 ANKRD62A6NC57 917 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 MYO1CO00159 1063 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 WDR46O15213 610 aaKnown RBP17.35■□□□□ 0.37
SHQ1-202ENST00000444040 P4HA2O15460 535 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 GTF2BQ00403 316 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 EPC2Q52LR7 807 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 PROCA1Q8NCQ7 364 aaPredicted RBP17.35■□□□□ 0.37
SHQ1-202ENST00000444040 ST6GALNAC4Q9H4F1 302 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 MTMR1Q13613 665 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 DCAF12L1Q5VU92 463 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 DDX42Q86XP3 938 aaKnown RBP eCLIP17.35■□□□□ 0.37
SHQ1-202ENST00000444040 ARHGEF19Q8IW93 802 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 CPXCR1Q8N123 301 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 SH2D3CQ8N5H7 860 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 ZSWIM2Q8NEG5 633 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 PLEKHO2Q8TD55 490 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 AGPAT1Q99943 283 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 NEUROG2Q9H2A3 272 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 SLITRK6Q9H5Y7 841 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 SLC38A10Q9HBR0 1119 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 RSPH14Q9UHP6 348 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 COG5Q9UP83 839 aa17.35■□□□□ 0.37
SHQ1-202ENST00000444040 ASTN2O75129 1339 aaPredicted RBP17.35■□□□□ 0.37
SHQ1-202ENST00000444040 ALAS1P13196 640 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 POU5F1Q01860 360 aaKnown RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 C1orf131Q8NDD1 294 aaKnown RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 SEC14L1Q92503 715 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 LPAR1Q92633 364 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 SH2D3AQ9BRG2 576 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 RAVER2Q9HCJ3 691 aaKnown RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 UBE2TQ9NPD8 197 aaPredicted RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 STK32BQ9NY57 414 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 HSPBP1Q9NZL4 362 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 AMACRQ9UHK6 382 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 BCS1LQ9Y276 419 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 SAMM50Q9Y512 469 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 YWHABP31946 246 aaKnown RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 HLTFQ14527 1009 aaKnown RBP eCLIP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 UGCGQ16739 394 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 EMC10Q5UCC4 262 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 KCTD16Q68DU8 428 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 HAUS6Q7Z4H7 955 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 XXYLT1Q8NBI6 393 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 SLC20A1Q8WUM9 679 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 TAAR1Q96RJ0 339 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 PDGFDQ9GZP0 370 aaPredicted RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 VPS33BQ9H267 617 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 TBC1D22BQ9NU19 505 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 SCAF8Q9UPN6 1271 aaKnown RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 TMEM150BA6NC51 233 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 MAPK13O15264 365 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 EIF3HO15372 352 aaKnown RBP eCLIP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 GCLMP48507 274 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 MCCD1P59942 119 aaPredicted RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 DGKZQ13574 1117 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 KIAA1683Q9H0B3 1180 aa17.34■□□□□ 0.37
SHQ1-202ENST00000444040 MAP3K20Q9NYL2 800 aaKnown RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 DIS3Q9Y2L1 958 aaKnown RBP17.34■□□□□ 0.37
SHQ1-202ENST00000444040 HADHBP55084 474 aaKnown RBP17.33■□□□□ 0.36
SHQ1-202ENST00000444040 GNGT1P63211 74 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 CXCL9Q07325 125 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 C4orf19Q8IY42 314 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 CAMKK2Q96RR4 588 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 NR2E1Q9Y466 385 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 BACH1O14867 736 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 FGGP02679 453 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 RPS6P62753 249 aaKnown RBP17.33■□□□□ 0.36
SHQ1-202ENST00000444040 PGM5Q15124 567 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 DNAJC21Q5F1R6 531 aaKnown RBP17.33■□□□□ 0.36
SHQ1-202ENST00000444040 VTI1AQ96AJ9 217 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 CARD9Q9H257 536 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 GPRC5CQ9NQ84 441 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 HOMER2Q9NSB8 354 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 SEPT11Q9NVA2 429 aaKnown RBP17.33■□□□□ 0.36
SHQ1-202ENST00000444040 PLAAQ9Y263 795 aa17.33■□□□□ 0.36
SHQ1-202ENST00000444040 PMM2O15305 246 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 ATP9AO75110 1047 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 EIF2AK2P19525 551 aaKnown RBP17.32■□□□□ 0.36
SHQ1-202ENST00000444040 HSD17B3P37058 310 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 NCKAP1LP55160 1127 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 CETN1Q12798 172 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 RASA3Q14644 834 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 UAP1Q16222 522 aaPredicted RBP17.32■□□□□ 0.36
SHQ1-202ENST00000444040 MAATS1Q7Z4T9 603 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 NIM1KQ8IY84 436 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 TEPSINQ96N21 525 aa17.32■□□□□ 0.36
SHQ1-202ENST00000444040 FEZ2Q9UHY8 353 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms