RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 DPH5Q9H2P9 285 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 FAM114A2Q9NRY5 505 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 BLOC1S4Q9NUP1 217 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 COL4A3BPQ9Y5P4 624 aa9.28□□□□□ -0.92
HPS4-206ENST00000439453 TTI1O43156 1089 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 GDF11O95390 407 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 GRM1Q13255 1194 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 GRB10Q13322 594 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 FAM133BQ5BKY9 247 aaKnown RBP9.27□□□□□ -0.92
HPS4-206ENST00000439453 GPAT2Q6NUI2 795 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 HOOK3Q86VS8 718 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 LRRC57Q8N9N7 239 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 AGAP11Q8TF27 550 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 SPAG5Q96R06 1193 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 SELENOSQ9BQE4 189 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 RIC8AQ9NPQ8 531 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 PANK4Q9NVE7 773 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 AIPL1Q9NZN9 384 aa9.27□□□□□ -0.92
HPS4-206ENST00000439453 ADGRA2Q96PE1 1338 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 TSPY2A6NKD2 308 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 STXBP3O00186 592 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 PPFIA2O75334 1257 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 HSPA1AP0DMV8 641 aaKnown RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 HSPA1BP0DMV9 641 aaKnown RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 IFI16Q16666 785 aaKnown RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 TRPM8Q7Z2W7 1104 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 LRRC34Q8IZ02 419 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 GLIS3Q8NEA6 775 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 ATXN2LQ8WWM7 1075 aaKnown RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 SEC14L1Q92503 715 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 NOP53Q9NZM5 478 aaKnown RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 ARPP21Q9UBL0 812 aaPredicted RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 ZBTB21Q9ULJ3 1066 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 ATP8A1Q9Y2Q0 1164 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 A0A0G2JLL6 359 aaPredicted RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 CAP1Q01518 475 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 ZNF268Q14587 947 aaPredicted RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 SLMAPQ14BN4 828 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 C10orf76Q5T2E6 689 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 PRRT2Q7Z6L0 340 aaPredicted RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 ZNF483Q8TF39 744 aaPredicted RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 ELAC2Q9BQ52 826 aaKnown RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 CFHR5Q9BXR6 569 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 CELF4Q9BZC1 486 aaKnown RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 BARHL2Q9NY43 387 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 SAMD15Q9P1V8 674 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 UTP11Q9Y3A2 253 aaKnown RBP9.27□□□□□ -0.93
HPS4-206ENST00000439453 PLIN4Q96Q06 1357 aa9.27□□□□□ -0.93
HPS4-206ENST00000439453 SARNPP82979 210 aaKnown RBP9.26□□□□□ -0.93
HPS4-206ENST00000439453 SLC35G1Q2M3R5 365 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 CDCA2Q69YH5 1023 aaPredicted RBP9.26□□□□□ -0.93
HPS4-206ENST00000439453 LARP4BQ92615 738 aaKnown RBP9.26□□□□□ -0.93
HPS4-206ENST00000439453 TXLNGYQ9BZA5 131 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 KCNMB3Q9NPA1 279 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 STK17AQ9UEE5 414 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 AGAP1Q9UPQ3 857 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 CSADQ9Y600 493 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 NQO1P15559 274 aaKnown RBP9.26□□□□□ -0.93
HPS4-206ENST00000439453 MMP13P45452 471 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 CDK8P49336 464 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 FKBP3Q00688 224 aaKnown RBP9.26□□□□□ -0.93
HPS4-206ENST00000439453 GRM4Q14833 912 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 SPDYCQ5MJ68 293 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 FOXR2Q6PJQ5 311 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 IFNL1Q8IU54 200 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 RASGEF1CQ8N431 466 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 ZNF570Q96NI8 536 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 PNMA5Q96PV4 448 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 FMO2Q99518 471 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 KIF9Q9HAQ2 790 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 RNF186Q9NXI6 227 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 KCNG1Q9UIX4 513 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 IGKV6D-41A0A0C4DH26 115 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 SHBGP04278 402 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 HLA-DOAP06340 250 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 HSPA8P11142 646 aaKnown RBP9.26□□□□□ -0.93
HPS4-206ENST00000439453 ALADP13716 330 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 RASA1P20936 1047 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 GNAQP50148 359 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 NONOQ15233 471 aaKnown RBP eCLIP9.26□□□□□ -0.93
HPS4-206ENST00000439453 KRT25Q7Z3Z0 450 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 EGFL6Q8IUX8 553 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 MYOCDQ8IZQ8 938 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 PNMA1Q8ND90 353 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 TPCN2Q8NHX9 752 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 TRIM31Q9BZY9 425 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 ADAM7Q9H2U9 754 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 ABCF3Q9NUQ8 709 aa9.26□□□□□ -0.93
HPS4-206ENST00000439453 DIAPH2O60879 1101 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 AKR1B1P15121 316 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 PTK2Q05397 1052 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 PSMD2Q13200 908 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 ZCWPW2Q504Y3 356 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 POTEEQ6S8J3 1075 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 PEX26Q7Z412 305 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 CLEC10AQ8IUN9 316 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 CDK5RAP3Q96JB5 506 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 TRIM51Q9BSJ1 452 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 GANQ9H2C0 597 aa9.25□□□□□ -0.93
HPS4-206ENST00000439453 MAD2L2Q9UI95 211 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms