RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 EFR3BQ9Y2G0 817 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 NUP62P37198 522 aaPredicted RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 LIG4P49917 911 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 MCPH1Q8NEM0 835 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 DEPTORQ8TB45 409 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 OTUD7AQ8TE49 926 aaPredicted RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 S100ZQ8WXG8 99 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 RFFLQ8WZ73 363 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 KLHL31Q9H511 634 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 SLC8A2Q9UPR5 921 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 CDC42BPAQ5VT25 1732 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 IGF2BP3O00425 579 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS53-204ENST00000437048 P4HA2O15460 535 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 HK2P52789 917 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 PLEKHM3Q6ZWE6 761 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 AADATQ8N5Z0 425 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 BFARQ9NZS9 450 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ZFATQ9P243 1243 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 KIAA0556O60303 1618 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 PDE5AO76074 875 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 POLR2FP61218 127 aaKnown RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 GOLGA8FQ08AF8 430 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 GOLGA8DPQ0D2H9 430 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 TTC27Q6P3X3 843 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 C1orf50Q9BV19 199 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 A1CFQ9NQ94 594 aaKnown RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 C6orf229H3BNL8 230 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 TGFBR2P37173 567 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 GGCXP38435 758 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ADCK5Q3MIX3 580 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 FAM47CQ5HY64 1035 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 CDKL3Q8IVW4 592 aaPredicted RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 EME1Q96AY2 570 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 TALDO1P37837 337 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 SKIV2L2P42285 1042 aaKnown RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 TFCP2Q12800 502 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 CCDC36Q8IYA8 594 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ZNF711Q9Y462 761 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 NCKAP5LQ9HCH0 1330 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 WDR64B1ANS9 1081 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 SLC16A3O15427 465 aaKnown RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 PER1O15534 1290 aaPredicted RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 ZBED1O96006 694 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 OATP04181 439 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 ANXA11P50995 505 aaKnown RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 HP1BP3Q5SSJ5 553 aaPredicted RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 ZNF398Q8TD17 642 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 USP28Q96RU2 1077 aa7.62□□□□□ -1.19
VPS53-204ENST00000437048 PRG3Q9Y2Y8 225 aaPredicted RBP7.62□□□□□ -1.19
VPS53-204ENST00000437048 WDR91A4D1P6 747 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 PRPSAP2O60256 369 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 BRAFP15056 766 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 NDUFA8P51970 172 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 RBM20Q5T481 1227 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 SIX6OS1Q8N1H7 587 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 GUF1Q8N442 669 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 MAGEC3Q8TD91 643 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 TRPC5OSA6NMA1 111 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 STAT5AP42229 794 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 STAT5BP51692 787 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 GPC5P78333 572 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 TSGA10IPQ3SY00 556 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ZNF544Q6NX49 715 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ARHGAP22Q7Z5H3 698 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 GPR141Q7Z602 305 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ANKRD36BP1Q96IX9 119 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 AS3MTQ9HBK9 375 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 C15orf38-AP3S2A0A0A6YYH1 394 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 NOP56O00567 594 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 GDF11O95390 407 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ROR2Q01974 943 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 PTK2BQ14289 1009 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 MTFR1Q15390 333 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 BEND6Q5SZJ8 279 aaPredicted RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 UNC13DQ70J99 1090 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ARPINQ7Z6K5 226 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 TRMT2AQ8IZ69 625 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 MMGT1Q8N4V1 131 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 RASSF5Q8WWW0 418 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 PPP2R3CQ969Q6 453 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 OTULINQ96BN8 352 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 DYDC2Q96IM9 177 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 DESI2Q9BSY9 194 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 VAT1LQ9HCJ6 419 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 FBXO28Q9NVF7 368 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 PSMC3IPQ9P2W1 217 aaPredicted RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 HOXB8P17481 243 aaPredicted RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 SPOPLQ6IQ16 392 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 TEKT3Q9BXF9 490 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 NMRK1Q9NWW6 199 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 TCHHQ07283 1943 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ZNF263O14978 683 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 PDE8AO60658 829 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 MMP1P03956 469 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 BCAP31P51572 246 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 DEPDC1BQ8WUY9 529 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.61□□□□□ -1.19
VPS53-204ENST00000437048 ETAA1Q9NY74 926 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 TMCO1Q9UM00 188 aa7.61□□□□□ -1.19
VPS53-204ENST00000437048 ATP5J2-PTCD1G3V325 749 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms