RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 DISP2A7MBM2 1401 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 SPATA31A5Q5VU36 1347 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 SPATA31A7Q8IWB4 1347 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 H0Y3Z8 333 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 PJA2O43164 708 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 PYGMP11217 842 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 RPL21P46778 160 aaKnown RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 PRKG1Q13976 671 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 SLC10A5Q5PT55 438 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 ZDHHC14Q8IZN3 488 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 CPA5Q8WXQ8 436 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 LRRC45Q96CN5 670 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 RBM17Q96I25 401 aaKnown RBP9.34□□□□□ -0.91
USP40-203ENST00000427112 PSMD1Q99460 953 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 WDR18Q9BV38 432 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 PNMA3Q9UL41 463 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 TELO2Q9Y4R8 837 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 LAMA3Q16787 3333 aa9.34□□□□□ -0.91
USP40-203ENST00000427112 ARHGEF35A5YM69 484 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 F8VZ95 297 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 EIF2AK2P19525 551 aaKnown RBP9.33□□□□□ -0.92
USP40-203ENST00000427112 FMO5P49326 533 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 PEX3P56589 373 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 MYO1EQ12965 1108 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 ABCB5Q2M3G0 1257 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 GRIPAP1Q4V328 841 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 FAM102BQ5T8I3 360 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 PRAMEF18Q5VWM3 479 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 NUGGCQ68CJ6 796 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 TRIM68Q6AZZ1 485 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 TTC27Q6P3X3 843 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 JAMLQ86YT9 394 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 TMEM130Q8N3G9 435 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 WHAMMQ8TF30 809 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 KLF6Q99612 283 aaPredicted RBP9.33□□□□□ -0.92
USP40-203ENST00000427112 MAGEF1Q9HAY2 307 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 SIX2Q9NPC8 291 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 RNF14Q9UBS8 474 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 BANF1O75531 89 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 PMS2P54278 862 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 CDK17Q00537 523 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 AOC3Q16853 763 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 GKAP1Q5VSY0 366 aaPredicted RBP9.33□□□□□ -0.92
USP40-203ENST00000427112 CCDC137Q6PK04 289 aaKnown RBP9.33□□□□□ -0.92
USP40-203ENST00000427112 SPOCK2Q92563 424 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 ZNF653Q96CK0 615 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 AGBL1Q96MI9 1066 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 AMNQ9BXJ7 453 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.33□□□□□ -0.92
USP40-203ENST00000427112 POC1B-GALNT4F8VUJ3 575 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 HIP1RO75146 1068 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 FAM107AO95990 144 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 GYS1P13807 737 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 SESN3P58005 492 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 KCNJ2P63252 427 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 PPP3CAQ08209 521 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 SPOPLQ6IQ16 392 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 MICALCLQ6ZW33 695 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 SRRM1Q8IYB3 904 aaKnown RBP9.33□□□□□ -0.92
USP40-203ENST00000427112 LRRC57Q8N9N7 239 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 ZKSCAN4Q969J2 545 aaPredicted RBP9.33□□□□□ -0.92
USP40-203ENST00000427112 ZNF577Q9BSK1 485 aa9.33□□□□□ -0.92
USP40-203ENST00000427112 TMX4Q9H1E5 349 aaPredicted RBP9.33□□□□□ -0.92
USP40-203ENST00000427112 TPX2Q9ULW0 747 aaKnown RBP9.33□□□□□ -0.92
USP40-203ENST00000427112 HMGB1P1B2RPK0 211 aaPredicted RBP9.32□□□□□ -0.92
USP40-203ENST00000427112 TCP11X1B4DZS4 312 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 LGR5O75473 907 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 IFNB1P01574 187 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 ALAS1P13196 640 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 SOX5P35711 763 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 DYNLT1P63172 113 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 APOBEC3HQ6NTF7 200 aaKnown RBP9.32□□□□□ -0.92
USP40-203ENST00000427112 CYFIP1Q7L576 1253 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 SH3BP5LQ7L8J4 393 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 CBWD2Q8IUF1 395 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 STAMBPL1Q96FJ0 436 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 WDR11Q9BZH6 1224 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 GOLGA8RI6L899 631 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 ATP2B4P23634 1241 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 RPL13P26373 211 aaKnown RBP9.32□□□□□ -0.92
USP40-203ENST00000427112 CHKAP35790 457 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 PSMC2P35998 433 aaKnown RBP9.32□□□□□ -0.92
USP40-203ENST00000427112 SCTRP47872 440 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 PSMD2Q13200 908 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 ATP13A4Q4VNC1 1196 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 SCARA3Q6AZY7 606 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 CYB5D1Q6P9G0 228 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 ZNF449Q6P9G9 518 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 BARGINQ6ZT62 677 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 IL31RAQ8NI17 732 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 LXNQ9BS40 222 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 AIPL1Q9NZN9 384 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 ODF2LQ9ULJ1 636 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 MYH7BA7E2Y1 1941 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 A0A1B0GUL6 1792 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 GOLGA6L10A0A0M3HER8 536 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 SLITRK3O94933 977 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 CD58P19256 250 aa9.32□□□□□ -0.92
USP40-203ENST00000427112 HSPA9P38646 679 aaKnown RBP9.32□□□□□ -0.92
USP40-203ENST00000427112 CLNS1AP54105 237 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms