RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 WDR45BQ5MNZ6 344 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 MSL1Q68DK7 614 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 ARHGAP36Q6ZRI8 547 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 OXR1Q8N573 874 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 EAF2Q96CJ1 260 aaPredicted RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 FCRL3Q96P31 734 aaPredicted RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 GDF15Q99988 308 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 WDR12Q9GZL7 423 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 RNF38Q9H0F5 515 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 VPS11Q9H270 941 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 CERS4Q9HA82 394 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 RASSF1Q9NS23 344 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 DPP7Q9UHL4 492 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 RWDD3Q9Y3V2 267 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 CTDP1Q9Y5B0 961 aaPredicted RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 BACE2Q9Y5Z0 518 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 LRRC14BA6NHZ5 514 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 RPL10P27635 214 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 CLK1P49759 484 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 MPP1Q00013 466 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 MAP3K12Q12852 859 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 L1TD1Q5T7N2 865 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 MYLK4Q86YV6 388 aaPredicted RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 DZIP1LQ8IYY4 767 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 PLD6Q8N2A8 252 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 NSUN6Q8TEA1 469 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 MAP3K14Q99558 947 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 B3GNT5Q9BYG0 378 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 FOXQ1Q9C009 403 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 CHST7Q9NS84 486 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 TSPY2A6NKD2 308 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 HMGB1P1B2RPK0 211 aaPredicted RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 C19orf81C9J6K1 198 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 H7C1D1 291 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 NKRFO15226 690 aaKnown RBP eCLIP3.04□□□□□ -1.92
MCF2-204ENST00000414978 OFD1O75665 1012 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 TSPY3P0CV98 308 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 TSPY8P0CW00 308 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 SCP2P22307 547 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 GALK1P51570 392 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 TSPY1Q01534 308 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 POU4F1Q01851 419 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 SUZ12Q15022 739 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 OVCH2Q7RTZ1 564 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 TMTC1Q8IUR5 882 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 IFNL2Q8IZJ0 200 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 CELF5Q8N6W0 485 aaKnown RBP3.04□□□□□ -1.92
MCF2-204ENST00000414978 LSMEM1Q8N8F7 131 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 MYD88Q99836 296 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 MENTQ9BUN1 341 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 BHMT2Q9H2M3 363 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 NLRC4Q9NPP4 1024 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 KMT5AQ9NQR1 393 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 KRT82Q9NSB4 513 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 RIC8BQ9NVN3 520 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 MAGEL2Q9UJ55 1249 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 GIT1Q9Y2X7 761 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 SH3BP1Q9Y3L3 701 aa3.04□□□□□ -1.92
MCF2-204ENST00000414978 UBR2Q8IWV8 1755 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 SSU72P8A0A1W2PR75 194 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 PRAMEF25A6NGN4 478 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 FOXN1O15353 648 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 SNX2O60749 519 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 PPFIA3O75145 1194 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 ADRB2P07550 413 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 PREPP48147 710 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 TERF1P54274 439 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 GAS6Q14393 721 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 NFKBIBQ15653 356 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 ZNF174Q15697 407 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 GRIK5Q16478 980 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 FAM26FQ5R3K3 315 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 EXOSC6Q5RKV6 272 aaKnown RBP3.03□□□□□ -1.92
MCF2-204ENST00000414978 SLC35F1Q5T1Q4 408 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 GPR158Q5T848 1215 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 INTS11Q5TA45 600 aaKnown RBP3.03□□□□□ -1.92
MCF2-204ENST00000414978 SV2AQ7L0J3 742 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 SMAP1Q8IYB5 467 aaPredicted RBP3.03□□□□□ -1.92
MCF2-204ENST00000414978 PRR18Q8N4B5 295 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 DCAF4Q8WV16 495 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 DCAF5Q96JK2 942 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 HERPUD2Q9BSE4 406 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 RIC8AQ9NPQ8 531 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 PCDHA13Q9Y5I0 950 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 DUOX1Q9NRD9 1551 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 B4E1Z4 1266 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 CFBP00751 764 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 ZKSCAN1P17029 563 aaPredicted RBP3.03□□□□□ -1.92
MCF2-204ENST00000414978 RHCEP18577 417 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 RHDQ02161 417 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 RING1Q06587 406 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 ALFQ53S48 1182 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 SGO2Q562F6 1265 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 ZC3H12BQ5HYM0 836 aaKnown RBP3.03□□□□□ -1.92
MCF2-204ENST00000414978 STYK1Q6J9G0 422 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 CDPF1Q6NVV7 123 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 LILRA6Q6PI73 481 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 UNQ6494/PRO21346Q6UXR6 183 aa3.03□□□□□ -1.92
MCF2-204ENST00000414978 MAMDC2Q7Z304 686 aaPredicted RBP3.03□□□□□ -1.92
MCF2-204ENST00000414978 KSR1Q8IVT5 923 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms