RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 Q3C1V9 767 aa16.41■□□□□ 0.22
GPC3-202ENST00000394299 ALKBH5Q6P6C2 394 aaKnown RBP16.41■□□□□ 0.22
GPC3-202ENST00000394299 OTUD6AQ7L8S5 288 aa16.41■□□□□ 0.22
GPC3-202ENST00000394299 SMAP1Q8IYB5 467 aaPredicted RBP16.41■□□□□ 0.22
GPC3-202ENST00000394299 CCDC127Q96BQ5 260 aa16.41■□□□□ 0.22
GPC3-202ENST00000394299 MS4A14Q96JA4 679 aa16.41■□□□□ 0.22
GPC3-202ENST00000394299 OSBPL9Q96SU4 736 aa16.41■□□□□ 0.22
GPC3-202ENST00000394299 TXNRD2Q9NNW7 524 aa16.41■□□□□ 0.22
GPC3-202ENST00000394299 FAM53CQ9NYF3 392 aa16.41■□□□□ 0.22
GPC3-202ENST00000394299 TMCO5BA8MYB1 307 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 F8VZ95 297 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 PGK2P07205 417 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 PRKCIP41743 596 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 ALDH5A1P51649 535 aaPredicted RBP16.4■□□□□ 0.22
GPC3-202ENST00000394299 DMP1Q13316 513 aaPredicted RBP16.4■□□□□ 0.22
GPC3-202ENST00000394299 GNPTABQ3T906 1256 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 SLC39A4Q6P5W5 647 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 ARHGEF19Q8IW93 802 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 MSANTD4Q8NCY6 345 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 RDM1Q8NG50 284 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 OLIG1Q8TAK6 271 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 LNX1Q8TBB1 728 aaPredicted RBP16.4■□□□□ 0.22
GPC3-202ENST00000394299 KAT5Q92993 513 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 ATP6V0A1Q93050 837 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 TMEM143Q96AN5 459 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 ALS2CR12Q96Q35 445 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 SPATC1LQ9H0A9 340 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 PDLIM7Q9NR12 457 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 CYP26B1Q9NR63 512 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 FBXL5Q9UKA1 691 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 FOXN3O00409 490 aaPredicted RBP16.4■□□□□ 0.22
GPC3-202ENST00000394299 EIF3JO75822 258 aaKnown RBP16.4■□□□□ 0.22
GPC3-202ENST00000394299 SOX5P35711 763 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 STAT1P42224 750 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 MATR3P43243 847 aaKnown RBP eCLIP16.4■□□□□ 0.226e-7■■■□□ 15.9
GPC3-202ENST00000394299 PLA2G4AP47712 749 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 BMS1Q14692 1282 aaKnown RBP16.4■□□□□ 0.22
GPC3-202ENST00000394299 GLYCTKQ8IVS8 523 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 CHST13Q8NET6 341 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 U2AF1L4Q8WU68 220 aaKnown RBP16.4■□□□□ 0.22
GPC3-202ENST00000394299 STK33Q9BYT3 514 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 ASCC2Q9H1I8 757 aaPredicted RBP16.4■□□□□ 0.22
GPC3-202ENST00000394299 ST6GALNAC4Q9H4F1 302 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 ABCB6Q9NP58 842 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 APEX2Q9UBZ4 518 aa16.4■□□□□ 0.22
GPC3-202ENST00000394299 DICER1Q9UPY3 1922 aaKnown RBP16.39■□□□□ 0.21
GPC3-202ENST00000394299 NFASCO94856 1347 aa16.39■□□□□ 0.21
GPC3-202ENST00000394299 MYPNQ86TC9 1320 aa16.39■□□□□ 0.21
GPC3-202ENST00000394299 SUPT20HL2P0C7V6 817 aa16.39■□□□□ 0.21
GPC3-202ENST00000394299 SMTNP53814 917 aa16.39■□□□□ 0.21
GPC3-202ENST00000394299 INTS8Q75QN2 995 aaKnown RBP16.39■□□□□ 0.21
GPC3-202ENST00000394299 CDCA5Q96FF9 252 aa16.39■□□□□ 0.21
GPC3-202ENST00000394299 UBE2TQ9NPD8 197 aaPredicted RBP16.39■□□□□ 0.21
GPC3-202ENST00000394299 TOPORSQ9NS56 1045 aaPredicted RBP16.39■□□□□ 0.21
GPC3-202ENST00000394299 LCTP09848 1927 aa16.39■□□□□ 0.21
GPC3-202ENST00000394299 CNMDO75829 334 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 IREB2P48200 963 aaKnown RBP16.38■□□□□ 0.21
GPC3-202ENST00000394299 RNASE9P60153 205 aaKnown RBP16.38■□□□□ 0.21
GPC3-202ENST00000394299 IRX3P78415 501 aaPredicted RBP16.38■□□□□ 0.21
GPC3-202ENST00000394299 ALCAMQ13740 583 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 LONRF2Q1L5Z9 754 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 TAS1R3Q7RTX0 852 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 PALB2Q86YC2 1186 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 RIOX2Q8IUF8 465 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 RNF10Q8N5U6 811 aaKnown RBP16.38■□□□□ 0.21
GPC3-202ENST00000394299 CDHR1Q96JP9 859 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 TMEM117Q9H0C3 514 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 ARFGAP3Q9NP61 516 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 RAB21Q9UL25 225 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 SYNGAP1Q96PV0 1343 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 WDR90Q96KV7 1748 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 A0A0G2JLL6 359 aaPredicted RBP16.38■□□□□ 0.21
GPC3-202ENST00000394299 GRID2IPA4D2P6 1211 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 MAP2K1Q02750 393 aaPredicted RBP16.38■□□□□ 0.21
GPC3-202ENST00000394299 MYBPC2Q14324 1141 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 SNRNP35Q16560 246 aaKnown RBP16.38■□□□□ 0.21
GPC3-202ENST00000394299 MIS18BP1Q6P0N0 1132 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 PRRT2Q7Z6L0 340 aaPredicted RBP16.38■□□□□ 0.21
GPC3-202ENST00000394299 MAP4K3Q8IVH8 894 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 C12orf56Q8IXR9 622 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 IWS1Q96ST2 819 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 TIPINQ9BVW5 301 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 ACP6Q9NPH0 428 aa16.38■□□□□ 0.21
GPC3-202ENST00000394299 BZW2Q9Y6E2 419 aaKnown RBP16.38■□□□□ 0.21
GPC3-202ENST00000394299 POTEB2H3BUK9 544 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 UBA1P22314 1058 aaKnown RBP16.37■□□□□ 0.21
GPC3-202ENST00000394299 NOP2P46087 812 aaKnown RBP16.37■□□□□ 0.21
GPC3-202ENST00000394299 LY6KQ17RY6 165 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 DNERQ8NFT8 737 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 SEMA4DQ92854 862 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 FUT8Q9BYC5 575 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 POLR3FQ9H1D9 316 aaPredicted RBP16.37■□□□□ 0.21
GPC3-202ENST00000394299 ZNF302Q9NR11 478 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 TAS2R14Q9NYV8 317 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 LOXHD1Q8IVV2 1947 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 DGAT1O75907 488 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 FERP16591 822 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 BEND6Q5SZJ8 279 aaPredicted RBP16.37■□□□□ 0.21
GPC3-202ENST00000394299 TMEM63BQ5T3F8 832 aa16.37■□□□□ 0.21
GPC3-202ENST00000394299 KRT222Q8N1A0 295 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms