RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 GZMAP12544 262 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 ALAS1P13196 640 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 SLC8A1P32418 973 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 ZNF76P36508 570 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 PTGIRP43119 386 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 SCTRP47872 440 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 FKBP1AP62942 108 aaKnown RBP10.8□□□□□ -0.68
COL17A1-203ENST00000393211 TNFAIP8L3Q5GJ75 292 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 APOBEC3HQ6NTF7 200 aaKnown RBP10.8□□□□□ -0.68
COL17A1-203ENST00000393211 CYB5D1Q6P9G0 228 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 ZDHHC24Q6UX98 284 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 FAM196AQ6ZSG2 479 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 CYFIP1Q7L576 1253 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 PTF1AQ7RTS3 328 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 PIGWQ7Z7B1 504 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 CERS5Q8N5B7 392 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 ZKSCAN4Q969J2 545 aaPredicted RBP10.8□□□□□ -0.68
COL17A1-203ENST00000393211 ZDHHC15Q96MV8 337 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 P2RX7Q99572 595 aaKnown RBP10.8□□□□□ -0.68
COL17A1-203ENST00000393211 IDI2Q9BXS1 227 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 ZC3H12CQ9C0D7 883 aaKnown RBP10.8□□□□□ -0.68
COL17A1-203ENST00000393211 NSRP1Q9H0G5 558 aaKnown RBP10.8□□□□□ -0.68
COL17A1-203ENST00000393211 AGPAT3Q9NRZ7 376 aa10.8□□□□□ -0.68
COL17A1-203ENST00000393211 SIPA1L1O43166 1804 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 F5H6K3 240 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 F8W031 263 aaPredicted RBP10.79□□□□□ -0.68
COL17A1-203ENST00000393211 EML1O00423 815 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 PPEF1O14829 653 aaPredicted RBP10.79□□□□□ -0.68
COL17A1-203ENST00000393211 MAPK13O15264 365 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 RGS16O15492 202 aaPredicted RBP10.79□□□□□ -0.68
COL17A1-203ENST00000393211 PPIP5K2O43314 1243 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 C21orf2O43822 256 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 CTNND1O60716 968 aaKnown RBP10.79□□□□□ -0.68
COL17A1-203ENST00000393211 RTN2O75298 545 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 PSMD10O75832 226 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 SLITRK3O94933 977 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 RARGP13631 454 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 MCCD1P59942 119 aaPredicted RBP10.79□□□□□ -0.68
COL17A1-203ENST00000393211 SNRPFP62306 86 aaKnown RBP10.79□□□□□ -0.68
COL17A1-203ENST00000393211 GPC5P78333 572 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 KCNA1Q09470 495 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 BFSP1Q12934 665 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 PRPF4BQ13523 1007 aaKnown RBP10.79□□□□□ -0.68
COL17A1-203ENST00000393211 CTTNQ14247 550 aaKnown RBP10.79□□□□□ -0.68
COL17A1-203ENST00000393211 NEDD9Q14511 834 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 SEL1L2Q5TEA6 688 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 MFSD5Q6N075 450 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 TAOK1Q7L7X3 1001 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 OTOP1Q7RTM1 612 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 FAM178BQ8IXR5 827 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 C12orf56Q8IXR9 622 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 PLCD3Q8N3E9 789 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 LMO3Q8TAP4 145 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 SLC5A5Q92911 643 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 HVCN1Q96D96 273 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 FIZ1Q96SL8 496 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 ZSWIM1Q9BR11 485 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 STRA6Q9BX79 667 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 THAP2Q9H0W7 228 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 DNAJC18Q9H819 358 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 EHMT1Q9H9B1 1298 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 KCNQ5Q9NR82 932 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 GRHL1Q9NZI5 618 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 PNMA2Q9UL42 364 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 MTUS1Q9ULD2 1270 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 TRPC6Q9Y210 931 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 NR2E1Q9Y466 385 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 ALG6Q9Y672 507 aa10.79□□□□□ -0.68
COL17A1-203ENST00000393211 ZNF536O15090 1300 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 SPATA31A6Q5VVP1 1343 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 IGSF9BQ9UPX0 1349 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 CFAP73A6NFT4 308 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 PHF20L1A8MW92 1017 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 DCDC2CA8MYV0 355 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 MGRN1O60291 552 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 MMEP08473 750 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 KRT13P13646 458 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 GYS1P13807 737 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 CHN1P15882 459 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 NMT1P30419 496 aaKnown RBP10.78□□□□□ -0.68
COL17A1-203ENST00000393211 PRELPP51888 382 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 PLTPP55058 493 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 CYP4A11Q02928 519 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 ICA1Q05084 483 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 RIPK1Q13546 671 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 INTS8Q75QN2 995 aaKnown RBP10.78□□□□□ -0.68
COL17A1-203ENST00000393211 TRMT10CQ7L0Y3 403 aaKnown RBP10.78□□□□□ -0.68
COL17A1-203ENST00000393211 DNAAF5Q86Y56 855 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 SIAH1Q8IUQ4 282 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 C12orf50Q8NA57 414 aaPredicted RBP10.78□□□□□ -0.68
COL17A1-203ENST00000393211 ATXN2LQ8WWM7 1075 aaKnown RBP10.78□□□□□ -0.68
COL17A1-203ENST00000393211 SLCO2A1Q92959 643 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 RNF25Q96BH1 459 aaPredicted RBP10.78□□□□□ -0.68
COL17A1-203ENST00000393211 ARHGEF26Q96DR7 871 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 JPH2Q9BR39 696 aaPredicted RBP10.78□□□□□ -0.68
COL17A1-203ENST00000393211 WDR11Q9BZH6 1224 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 PCDHA3Q9Y5H8 950 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 UBR3Q6ZT12 1888 aa10.78□□□□□ -0.68
COL17A1-203ENST00000393211 RPTORQ8N122 1335 aa10.77□□□□□ -0.68
COL17A1-203ENST00000393211 BMP3P12645 472 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms