RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 AZI2Q9H6S1 392 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 PSTPIP2Q9H939 334 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 SAMD15Q9P1V8 674 aa12□□□□□ -0.49
CCDC40-203ENST00000374877 PPP1R11O60927 126 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 GHRP10912 638 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 SLCO1A2P46721 670 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 EPHA7Q15375 998 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 MICALL2Q8IY33 904 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 ADGRF4Q8IZF3 695 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 SEC14L1Q92503 715 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 DNAJC18Q9H819 358 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 JMJD4Q9H9V9 463 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 NOD2Q9HC29 1040 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 INTS9Q9NV88 658 aaKnown RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 CNOT7Q9UIV1 285 aaKnown RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 PNMA6FA0A0J9YX94 578 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L15C9J2P7 530 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L13C9JLJ4 530 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L11C9JVI0 530 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L18D6R9N7 530 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L22D6RA61 530 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L17D6RBQ6 530 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L19D6RCP7 530 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L20D6RJB6 530 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 TBC1D12O60347 775 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 ATP6V1G2O95670 118 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 AKR1B1P15121 316 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 STAT1P42224 750 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L24Q0WX57 530 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 TNFAIP1Q13829 316 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L6PQ6QN14 398 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 TBC1D1Q86TI0 1168 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 LRRC34Q8IZ02 419 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 BANK1Q8NDB2 785 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 CTNNBL1Q8WYA6 563 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 ERP44Q9BS26 406 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 ERVK-5Q9HDB9 667 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 GJA3Q9Y6H8 435 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 GREB1LQ9C091 1923 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 A0A0A6YYK5 440 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 CLRN2A0PK11 232 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 CALUO43852 315 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 MGRN1O60291 552 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 EVI5O60447 810 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 PSEN1P49768 467 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 PTENP60484 403 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 IFI35P80217 286 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 POU5F1Q01860 360 aaKnown RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 HYIQ5T013 277 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 ZC3H3Q8IXZ2 948 aaKnown RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 FBXO25Q8TCJ0 367 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 MIEF2Q96C03 454 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 ZNF317Q96PQ6 595 aaPredicted RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 PABPC3Q9H361 631 aaKnown RBP11.99□□□□□ -0.49
CCDC40-203ENST00000374877 MTMR4Q9NYA4 1195 aa11.99□□□□□ -0.49
CCDC40-203ENST00000374877 CCDC169A6NNP5 214 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 TCP10L2B9ZVM9 353 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 NR3C1P04150 777 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 GCFC2P16383 781 aaKnown RBP11.98□□□□□ -0.49
CCDC40-203ENST00000374877 FERP16591 822 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 YBX3P16989 372 aaKnown RBP eCLIP11.98□□□□□ -0.49
CCDC40-203ENST00000374877 SLC12A3P55017 1021 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 PSMC6P62333 389 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 SLC29A2Q14542 456 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 NAA25Q14CX7 972 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 NBPF9Q3BBW0 867 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 DCAF12L1Q5VU92 463 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 LNX1Q8TBB1 728 aaPredicted RBP11.98□□□□□ -0.49
CCDC40-203ENST00000374877 PRMT1Q99873 361 aaKnown RBP11.98□□□□□ -0.49
CCDC40-203ENST00000374877 REEP2Q9BRK0 252 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 SIX2Q9NPC8 291 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.98□□□□□ -0.49
CCDC40-203ENST00000374877 TMOD4Q9NZQ9 345 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 IGSF9BQ9UPX0 1349 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 GCNT3O95395 438 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 MAGEC3Q8TD91 643 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 RFFLQ8WZ73 363 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 CENPTQ96BT3 561 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 CSRNP1Q96S65 589 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 PGAP2Q9UHJ9 254 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 GGT7Q9UJ14 662 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 TRAF3IP3Q9Y228 551 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 GIT2Q14161 759 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 ACCSLQ4AC99 568 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 DUPD1Q68J44 220 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 JAMLQ86YT9 394 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 SLC35C1Q96A29 364 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 RNF25Q96BH1 459 aaPredicted RBP11.98□□□□□ -0.49
CCDC40-203ENST00000374877 EPB41L4BQ9H329 900 aa11.98□□□□□ -0.49
CCDC40-203ENST00000374877 RSPH10B2B2RC85 870 aa11.97□□□□□ -0.49
CCDC40-203ENST00000374877 USP17L10C9JJH3 530 aa11.97□□□□□ -0.49
CCDC40-203ENST00000374877 RSPH10BP0C881 870 aa11.97□□□□□ -0.49
CCDC40-203ENST00000374877 RPL13P26373 211 aaKnown RBP11.97□□□□□ -0.49
CCDC40-203ENST00000374877 HOXD13P35453 343 aa11.97□□□□□ -0.49
CCDC40-203ENST00000374877 NPEPPSP55786 919 aa11.97□□□□□ -0.49
CCDC40-203ENST00000374877 JAM2P57087 298 aa11.97□□□□□ -0.49
CCDC40-203ENST00000374877 MAP3K10Q02779 954 aa11.97□□□□□ -0.49
CCDC40-203ENST00000374877 KCNA1Q09470 495 aa11.97□□□□□ -0.49
CCDC40-203ENST00000374877 CERKLQ49MI3 558 aaPredicted RBP11.97□□□□□ -0.49
CCDC40-203ENST00000374877 KIAA1755Q5JYT7 1200 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 323.5 ms