RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 PHKA1P46020 1223 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 SFSWAPQ12872 951 aaKnown RBP12.57□□□□□ -0.4
PTPN1-201ENST00000371621 FITM2Q8N6M3 262 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 NLRP7Q8WX94 980 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 ZSCAN10Q96SZ4 725 aaPredicted RBP12.57□□□□□ -0.4
PTPN1-201ENST00000371621 CRNKL1Q9BZJ0 848 aaKnown RBP12.57□□□□□ -0.4
PTPN1-201ENST00000371621 ASCC2Q9H1I8 757 aaPredicted RBP12.57□□□□□ -0.4
PTPN1-201ENST00000371621 UNC45AQ9H3U1 944 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 GCNT4Q9P109 453 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 AGTPBP1Q9UPW5 1226 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 SMCO2A6NFE2 343 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 SMAPO00193 183 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 EXOC3O60645 756 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 MT-ND3P03897 115 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 DLATP10515 647 aaKnown RBP12.57□□□□□ -0.4
PTPN1-201ENST00000371621 SCARF1Q14162 830 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 PLBD2Q8NHP8 589 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 CFAP57Q96MR6 1250 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 PHF12Q96QT6 1004 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 ZNF184Q99676 751 aaPredicted RBP12.57□□□□□ -0.4
PTPN1-201ENST00000371621 CEP72Q9P209 647 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 CTNNAL1Q9UBT7 734 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 LMTK2Q8IWU2 1503 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 ARHGEF10O15013 1369 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 METP08581 1390 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 KRT75O95678 551 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 YWHAGP61981 247 aaKnown RBP eCLIP12.57□□□□□ -0.4
PTPN1-201ENST00000371621 RIPK1Q13546 671 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 ZNF268Q14587 947 aaPredicted RBP12.57□□□□□ -0.4
PTPN1-201ENST00000371621 NAB2Q15742 525 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 TXNRD1Q16881 649 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 MAP3K21Q5TCX8 1036 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.57□□□□□ -0.41e-21■■■■■ 96
PTPN1-201ENST00000371621 C18orf8Q96DM3 657 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 TRABDQ9H4I3 376 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 ETNK2Q9NVF9 386 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 UTP6Q9NYH9 597 aaKnown RBP12.57□□□□□ -0.4
PTPN1-201ENST00000371621 WDR35Q9P2L0 1181 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 ADGRL3Q9HAR2 1447 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 FAM47DPA6NHR8 397 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 TOM1L1O75674 476 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 UNC5CO95185 931 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 SARSP49591 514 aaKnown RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 SLC34A1Q06495 639 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 KCNH2Q12809 1159 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 TUBB6Q9BUF5 446 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 RIC8AQ9NPQ8 531 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 TBC1D23Q9NUY8 699 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 TXNDC16Q9P2K2 825 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 NKX1-2Q9UD57 310 aaPredicted RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 PITPNM2Q9BZ72 1349 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 USP42Q9H9J4 1324 aaKnown RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 GON4LQ3T8J9 2241 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 TNRQ92752 1358 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 STARD3NLO95772 234 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 EEF1DP29692 281 aaKnown RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 POLGP54098 1239 aaPredicted RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 PPP2R5DQ14738 602 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 LACTB2Q53H82 288 aaPredicted RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 PRR16Q569H4 304 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 APLFQ8IW19 511 aaPredicted RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 TRIM59Q8IWR1 403 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 PAIP1Q9H074 479 aaKnown RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 CPVLQ9H3G5 476 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 PDS5AQ29RF7 1337 aaKnown RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 ATXN2Q99700 1313 aaKnown RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 GLI2P10070 1586 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 CHMP2AO43633 222 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 LIFRP42702 1097 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 BSPRYQ5W0U4 402 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 CC2D2BQ6DHV5 1058 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 PPM1KQ8N3J5 372 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 FAM13CQ8NE31 585 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 GPR101Q96P66 508 aaPredicted RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 SLCO1B3Q9NPD5 702 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.56□□□□□ -0.4
PTPN1-201ENST00000371621 ASAP1Q9ULH1 1129 aa12.56□□□□□ -0.4
PTPN1-201ENST00000371621 AATKQ6ZMQ8 1374 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 INHBAP08476 426 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 USP11P51784 963 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 PTK2Q05397 1052 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 MKRN3Q13064 507 aaKnown RBP12.55□□□□□ -0.4
PTPN1-201ENST00000371621 BBS9Q3SYG4 887 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 PDZD8Q8NEN9 1154 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 ABHD8Q96I13 439 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 GRIP2Q9C0E4 1043 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 ARMCX1Q9P291 453 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 A6NJR5 290 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 XPOTO43592 962 aaKnown RBP12.55□□□□□ -0.4
PTPN1-201ENST00000371621 RARAP10276 462 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 PYGMP11217 842 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 SMAD1Q15797 465 aaKnown RBP12.55□□□□□ -0.4
PTPN1-201ENST00000371621 TMEM132AQ24JP5 1023 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 TBC1D10BQ4KMP7 808 aaPredicted RBP12.55□□□□□ -0.4
PTPN1-201ENST00000371621 FERMT1Q9BQL6 677 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 MRPL1Q9BYD6 325 aaKnown RBP12.55□□□□□ -0.4
PTPN1-201ENST00000371621 IRS4O14654 1257 aaPredicted RBP12.55□□□□□ -0.4
PTPN1-201ENST00000371621 E2F6O75461 281 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 GYS1P13807 737 aa12.55□□□□□ -0.4
PTPN1-201ENST00000371621 MAN1A1P33908 653 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms