RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 ITGA7Q13683 1181 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 LAMC2Q13753 1193 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 KCTD2Q14681 263 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 MICU3Q86XE3 530 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 RDM1Q8NG50 284 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 GOLGA1Q92805 767 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 CLIC6Q96NY7 704 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 ANKZF1Q9H8Y5 726 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 IL23AQ9NPF7 189 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 MTMR10Q9NXD2 777 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 LMCD1Q9NZU5 365 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 VPS13AQ96RL7 3174 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 FRMD3A2A2Y4 597 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 GOLGA6L9A6NEM1 432 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 PFKMP08237 780 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 GNAQP50148 359 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 KRT85P78386 507 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 WDR93Q6P2C0 686 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 PHOSPHO2Q8TCD6 241 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 NUP133Q8WUM0 1156 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 CRACR2AQ9BSW2 395 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 ACBD3Q9H3P7 528 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 SLC24A3Q9HC58 644 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 PPME1Q9Y570 386 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 ASPMQ8IZT6 3477 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 ERICH2A1L162 156 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 ATP2B2Q01814 1243 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 SHHQ15465 462 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 ZNF746Q6NUN9 644 aaPredicted RBP7.55□□□□□ -1.2
CSDE1-204ENST00000369530 ALKAL1Q6UXT8 129 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 LIMS2Q7Z4I7 341 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 RPUSD2Q8IZ73 545 aaKnown RBP7.55□□□□□ -1.2
CSDE1-204ENST00000369530 TMEM40Q8WWA1 233 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 CCDC34Q96HJ3 373 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 RMDN3Q96TC7 470 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 RIT2Q99578 217 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 MTG1Q9BT17 334 aaPredicted RBP7.55□□□□□ -1.2
CSDE1-204ENST00000369530 DHX33Q9H6R0 707 aaKnown RBP7.55□□□□□ -1.2
CSDE1-204ENST00000369530 IFT122Q9HBG6 1241 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 ERVK-5Q9HDB9 667 aa7.55□□□□□ -1.2
CSDE1-204ENST00000369530 ZNF638Q14966 1978 aaKnown RBP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 FAM205CA6NFA0 338 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 CCDC85CA6NKD9 419 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 EML1O00423 815 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 BAIAP3O94812 1187 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 SYF2O95926 243 aaKnown RBP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 MUTP22033 750 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 BEX3Q00994 111 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 CTC1Q2NKJ3 1217 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 CCDC60Q8IWA6 550 aaPredicted RBP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 ARRDC4Q8NCT1 418 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 ANO3Q9BYT9 981 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 ADD3Q9UEY8 706 aaKnown RBP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 CORO1CQ9ULV4 474 aaPredicted RBP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 CPT1AP50416 773 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 MAPK7Q13164 816 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 ARID5BQ14865 1188 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 STXBP2Q15833 593 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 CWF19L1Q69YN2 538 aaKnown RBP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 PCSK9Q8NBP7 692 aaKnown RBP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 CARD6Q9BX69 1037 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 GBP3Q9H0R5 595 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 PTPRHQ9HD43 1115 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 GJB4Q9NTQ9 266 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 CXXC1Q9P0U4 656 aaPredicted RBP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 ARHGAP25P42331 645 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 FXR2P51116 673 aaKnown RBP eCLIP7.54□□□□□ -1.25e-7■□□□□ 10.4
CSDE1-204ENST00000369530 PSMC6P62333 389 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 SKOR1P84550 965 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 CEP55Q53EZ4 464 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 MTHFD1LQ6UB35 978 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 SPATA21Q7Z572 469 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 C3orf20Q8ND61 904 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 SPATA32Q96LK8 384 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 SH3GL2Q99962 352 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.54□□□□□ -1.2
CSDE1-204ENST00000369530 EBF2Q9HAK2 575 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 MTMR6Q9Y217 621 aa7.54□□□□□ -1.2
CSDE1-204ENST00000369530 POTEB3A0JP26 581 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 EBAG9O00559 213 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 ZBTB43O43298 467 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 SLC26A4O43511 780 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 MGRN1O60291 552 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 MGEA5O60502 916 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 GH1P01241 217 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 RARBP10826 455 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 ALAS1P13196 640 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 CCND2P30279 289 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 RDXP35241 583 aaKnown RBP7.53□□□□□ -1.2
CSDE1-204ENST00000369530 ZNF165P49910 485 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 LIG3P49916 1009 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 TLE2Q04725 743 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 ACTN3Q08043 901 aaPredicted RBP7.53□□□□□ -1.2
CSDE1-204ENST00000369530 SFSWAPQ12872 951 aaKnown RBP7.53□□□□□ -1.2
CSDE1-204ENST00000369530 CAMK4Q16566 473 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 UBE2SQ16763 222 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 UBXN11Q5T124 520 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 ARMCX5Q6P1M9 558 aa7.53□□□□□ -1.2
CSDE1-204ENST00000369530 POTEBQ6S5H4 581 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms