RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 SAYSD1Q9NPB0 183 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 KCND2Q9NZV8 630 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 FBXO2Q9UK22 296 aaPredicted RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 LRFN2Q9ULH4 789 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 GOLGA8IPA6NC78 632 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 GOLGA8JA6NMD2 632 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 C12orf60Q5U649 245 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 PDXDC1Q6P996 788 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 RHOT1Q8IXI2 618 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 PIGOQ8TEQ8 1089 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 PPWD1Q96BP3 646 aaKnown RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 FAF2Q96CS3 445 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 TRIM4Q9C037 500 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 VIPAS39Q9H9C1 493 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 GINM1Q9NU53 330 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 TBK1Q9UHD2 729 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 FAF1Q9UNN5 650 aaPredicted RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 SNX24Q9Y343 169 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 KDM6AO15550 1401 aaPredicted RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 FAM205CA6NFA0 338 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 UBE2Q2LH0YL09 131 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 SMARCA1P28370 1054 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 QRICH1Q2TAL8 776 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 ZNF699Q32M78 642 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 PRR5LQ6MZQ0 368 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 CATSPER4Q7RTX7 472 aa12.54□□□□□ -0.4
COL9A1-202ENST00000357250 ZNF564Q8TBZ8 553 aaPredicted RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 INTS2Q9H0H0 1204 aaKnown RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 NGRNQ9NPE2 291 aaKnown RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 NOP53Q9NZM5 478 aaKnown RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 PDS5AQ29RF7 1337 aaKnown RBP12.54□□□□□ -0.4
COL9A1-202ENST00000357250 A0A1B0GTH6 734 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 MX2P20592 715 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 SLC1A1P43005 524 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 SP8Q8IXZ3 490 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 STAG2Q8N3U4 1231 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 TRIM62Q9BVG3 475 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 STAP1Q9ULZ2 295 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 F5H6K3 240 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 ACSL3O95573 720 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 SRGAP2CP0DJJ0 459 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 STAT3P40763 770 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 PPP2R2AP63151 447 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 KLRC3Q07444 240 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 DRAP1Q14919 205 aaPredicted RBP12.53□□□□□ -0.4
COL9A1-202ENST00000357250 RNF168Q8IYW5 571 aaPredicted RBP12.53□□□□□ -0.4
COL9A1-202ENST00000357250 MCUQ8NE86 351 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 POTEB3A0JP26 581 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 POTECB2RU33 542 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L10C9JJH3 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 ZFXP17010 805 aaPredicted RBP12.53□□□□□ -0.4
COL9A1-202ENST00000357250 GCLMP48507 274 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 PMS2P54278 862 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 NKX1-1Q15270 411 aaPredicted RBP12.53□□□□□ -0.4
COL9A1-202ENST00000357250 RSBN1LQ6PCB5 846 aaPredicted RBP12.53□□□□□ -0.4
COL9A1-202ENST00000357250 KCNV1Q6PIU1 500 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 POTEBQ6S5H4 581 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 DYDC2Q96IM9 177 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 MTRQ99707 1265 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 MAGEB5Q9BZ81 275 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L15C9J2P7 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 RASA4BC9J798 803 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L13C9JLJ4 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L11C9JVI0 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L18D6R9N7 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L22D6RA61 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L17D6RBQ6 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L19D6RCP7 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L20D6RJB6 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 RASA4O43374 803 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 PYGBP11216 843 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 MDM2Q00987 491 aaPredicted RBP12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L24Q0WX57 530 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 CCDC144BQ3MJ40 725 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 USP17L6PQ6QN14 398 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 DSTYKQ6XUX3 929 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 BEST2Q8NFU1 509 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 GIPC2Q8TF65 315 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 NSUN4Q96CB9 384 aaKnown RBP12.53□□□□□ -0.4
COL9A1-202ENST00000357250 NLRP4Q96MN2 994 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 PPCSQ9HAB8 311 aa12.53□□□□□ -0.4
COL9A1-202ENST00000357250 UBE4BO95155 1302 aa12.52□□□□□ -0.4
COL9A1-202ENST00000357250 DENND3A2RUS2 1198 aa12.52□□□□□ -0.4
COL9A1-202ENST00000357250 EFNA5P52803 228 aa12.52□□□□□ -0.4
COL9A1-202ENST00000357250 TAF11Q15544 211 aa12.52□□□□□ -0.4
COL9A1-202ENST00000357250 FAM133BQ5BKY9 247 aaKnown RBP12.52□□□□□ -0.4
COL9A1-202ENST00000357250 TEDDM1Q5T9Z0 273 aa12.52□□□□□ -0.4
COL9A1-202ENST00000357250 INTS5Q6P9B9 1019 aaKnown RBP12.52□□□□□ -0.4
COL9A1-202ENST00000357250 TADA2BQ86TJ2 420 aa12.52□□□□□ -0.4
COL9A1-202ENST00000357250 EPB41L4AQ9HCS5 686 aaPredicted RBP12.52□□□□□ -0.4
COL9A1-202ENST00000357250 SPATS2LQ9NUQ6 558 aaKnown RBP12.52□□□□□ -0.4
COL9A1-202ENST00000357250 TUBE1Q9UJT0 475 aa12.52□□□□□ -0.4
COL9A1-202ENST00000357250 GMNCA6NCL1 334 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 SPECC1L-ADORA2AF8WAN1 911 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 CHUKO15111 745 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 FOXN1O15353 648 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 ASAP2O43150 1006 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 SOX5P35711 763 aa12.52□□□□□ -0.41
COL9A1-202ENST00000357250 SF3B3Q15393 1217 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms