RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ANKRD40Q6AI12 368 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 CATSPER4Q7RTX7 472 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 AFAP1L1Q8TED9 768 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 POMGNT1Q8WZA1 660 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 CBWD1Q9BRT8 395 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 NRCAMQ92823 1304 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 MAFO75444 373 aaPredicted RBP10.12□□□□□ -0.79
USP4-202ENST00000351842 TMEM130Q8N3G9 435 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 CEP120Q8N960 986 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 TMEM40Q8WWA1 233 aa10.12□□□□□ -0.79
USP4-202ENST00000351842 EMID1Q96A84 441 aaPredicted RBP10.12□□□□□ -0.79
USP4-202ENST00000351842 NAT10Q9H0A0 1025 aaKnown RBP10.12□□□□□ -0.79
USP4-202ENST00000351842 M0QZ92 97 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 LETM1O95202 739 aaPredicted RBP10.11□□□□□ -0.79
USP4-202ENST00000351842 SERPINC1P01008 464 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 IQCF3P0C7M6 154 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 CASP4P49662 377 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 DRC7Q8IY82 874 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 VPS16Q9H269 839 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 PIN4Q9Y237 131 aaKnown RBP10.11□□□□□ -0.79
USP4-202ENST00000351842 PPP1R3GB7ZBB8 358 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 RHOBTB3O94955 611 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 DLATP10515 647 aaKnown RBP10.11□□□□□ -0.79
USP4-202ENST00000351842 NR2F2P24468 414 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 CYP2C18P33260 490 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 SLC26A2P50443 739 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 TARBP2Q15633 366 aaKnown RBP10.11□□□□□ -0.79
USP4-202ENST00000351842 CCDC40Q4G0X9 1142 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 ZNF484Q5JVG2 852 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 HS2ST1Q7LGA3 356 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 ZBTB8OSQ8IWT0 167 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 KIFAP3Q92845 792 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 NIFKQ9BYG3 293 aaKnown RBP10.11□□□□□ -0.79
USP4-202ENST00000351842 SEMA6BQ9H3T3 888 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 PAK6Q9NQU5 681 aaPredicted RBP10.11□□□□□ -0.79
USP4-202ENST00000351842 GTF2IRD1Q9UHL9 959 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 TET1Q8NFU7 2136 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 ANKRD63C9JTQ0 380 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 EXOC3O60645 756 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 EDN1P05305 212 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 GUCY2CP25092 1073 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 SARSP49591 514 aaKnown RBP10.11□□□□□ -0.79
USP4-202ENST00000351842 MAPK6Q16659 721 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 ARMCX5Q6P1M9 558 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 ZNF720Q7Z2F6 126 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 KLHDC9Q8NEP7 349 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 PCMTD1Q96MG8 357 aaPredicted RBP10.11□□□□□ -0.79
USP4-202ENST00000351842 CRACR2AQ9BSW2 395 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 TRIM6Q9C030 488 aaPredicted RBP10.11□□□□□ -0.79
USP4-202ENST00000351842 TRIM5Q9C035 493 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 MAGEF1Q9HAY2 307 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 TAB2Q9NYJ8 693 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 CDY2AQ9Y6F7 541 aa10.11□□□□□ -0.79
USP4-202ENST00000351842 VCANP13611 3396 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 UPP2O95045 317 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 LYPLA2O95372 231 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 PRKCBP05771 671 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 GNAT1P11488 350 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 ADAM9Q13443 819 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 ZBTB41Q5SVQ8 909 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 FAM200AQ8TCP9 573 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 RABGGTAQ92696 567 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 FAM213AQ9BRX8 229 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 MAF1Q9H063 256 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 KLK14Q9P0G3 267 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 WDR81Q562E7 1941 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 RFC5P40937 340 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 MTIF2P46199 727 aaKnown RBP10.1□□□□□ -0.79
USP4-202ENST00000351842 TWF2Q6IBS0 349 aaKnown RBP10.1□□□□□ -0.79
USP4-202ENST00000351842 TMCO2Q7Z6W1 182 aaPredicted RBP10.1□□□□□ -0.79
USP4-202ENST00000351842 TMEM161BQ8NDZ6 487 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 MED15Q96RN5 788 aa10.1□□□□□ -0.79
USP4-202ENST00000351842 ZMYND8Q9ULU4 1186 aaPredicted RBP10.1□□□□□ -0.79
USP4-202ENST00000351842 XIRP2A4UGR9 3374 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 PVALEFA0A1B0GWK0 134 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 CD52P31358 61 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 MYL5Q02045 173 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 PRPF4BQ13523 1007 aaKnown RBP10.09□□□□□ -0.79
USP4-202ENST00000351842 GLRA4Q5JXX5 417 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 ZNF618Q5T7W0 954 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 IER5Q5VY09 327 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 EEF1DP3Q658K8 133 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 SESTD1Q86VW0 696 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 CCDC155Q8N6L0 562 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 MLKLQ8NB16 471 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 DPF3Q92784 378 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 P2RX5Q93086 422 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 POP1Q99575 1024 aaKnown RBP10.09□□□□□ -0.79
USP4-202ENST00000351842 GBP3Q9H0R5 595 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 ODF2LQ9ULJ1 636 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 TBX20Q9UMR3 447 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 LRRC37A2A6NM11 1700 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 RRN3P2A6NIE6 340 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 MAGEB2O15479 319 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 TRIM49P0CI25 452 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 TRIM49CP0CI26 452 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 HOXD13P35453 343 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 ENOX2Q16206 610 aaKnown RBP10.09□□□□□ -0.79
USP4-202ENST00000351842 ZNF568Q3ZCX4 644 aa10.09□□□□□ -0.79
USP4-202ENST00000351842 ADSSL1Q8N142 457 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms