RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 FMO5P49326 533 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 ETF1P62495 437 aaKnown RBP14.61□□□□□ -0.07
HMGB1-202ENST00000339872 CDK17Q00537 523 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 PLCB4Q15147 1175 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 TRIM65Q6PJ69 517 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 INTS8Q75QN2 995 aaKnown RBP14.61□□□□□ -0.07
HMGB1-202ENST00000339872 TAS1R3Q7RTX0 852 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 DEPTORQ8TB45 409 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 SMARCAD1Q9H4L7 1026 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 PLCB1Q9NQ66 1216 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 KCNG1Q9UIX4 513 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 TRPC6Q9Y210 931 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 GTPBP10A4D1E9 387 aaKnown RBP14.61□□□□□ -0.07
HMGB1-202ENST00000339872 GOLGA8IPA6NC78 632 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 SLC15A5A6NIM6 579 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 GOLGA8JA6NMD2 632 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 TUBB4AP04350 444 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 PLEKP08567 350 aaPredicted RBP14.61□□□□□ -0.07
HMGB1-202ENST00000339872 SLC10A3P09131 477 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 ADSSP30520 456 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 ABCD1P33897 745 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 LAMC2Q13753 1193 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 SLC39A4Q6P5W5 647 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 NPLOC4Q8TAT6 608 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 SAAL1Q96ER3 474 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 NUCKS1Q9H1E3 243 aaKnown RBP14.61□□□□□ -0.07
HMGB1-202ENST00000339872 DNAI1Q9UI46 699 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 PPME1Q9Y570 386 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 PASKQ96RG2 1323 aa14.61□□□□□ -0.07
HMGB1-202ENST00000339872 RBM47A0AV96 593 aaKnown RBP14.6□□□□□ -0.07
HMGB1-202ENST00000339872 SLC26A2P50443 739 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 RAPGEF1Q13905 1077 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 CBWD6Q4V339 395 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 CBWD3Q5JTY5 395 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 CBWD5Q5RIA9 395 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 SFMBT2Q5VUG0 894 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 CCDC170Q8IYT3 715 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 POMGNT1Q8WZA1 660 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 TINF2Q9BSI4 451 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 ZCCHC17Q9NP64 241 aaKnown RBP14.6□□□□□ -0.07
HMGB1-202ENST00000339872 ARHGAP20Q9P2F6 1191 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 DOCK3Q8IZD9 2030 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.6□□□□□ -0.07
HMGB1-202ENST00000339872 ZBTB42B2RXF5 422 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 RIOK3O14730 519 aaKnown RBP14.6□□□□□ -0.07
HMGB1-202ENST00000339872 UCHL3P15374 230 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 VAMP7P51809 220 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 DLG4P78352 724 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 MYL7Q01449 175 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 STRN3Q13033 797 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 DRP2Q13474 957 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 ARHGAP29Q52LW3 1261 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 BRDTQ58F21 947 aaPredicted RBP14.6□□□□□ -0.07
HMGB1-202ENST00000339872 KLHDC7AQ5VTJ3 777 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 DPY19L2P1Q6NXN4 242 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 IFNL1Q8IU54 200 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 CCDC42Q96M95 316 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 SLC5A4Q9NY91 659 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 ZHX1Q9UKY1 873 aaPredicted RBP14.6□□□□□ -0.07
HMGB1-202ENST00000339872 REXO2Q9Y3B8 237 aaKnown RBP14.6□□□□□ -0.07
HMGB1-202ENST00000339872 FHOD1Q9Y613 1164 aa14.6□□□□□ -0.07
HMGB1-202ENST00000339872 MAPK13O15264 365 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 IPO7O95373 1038 aaKnown RBP14.59□□□□□ -0.07
HMGB1-202ENST00000339872 ADRB2P07550 413 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 LIG4P49917 911 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 TERF1P54274 439 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 GNG11P61952 73 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 CAPSQ13938 189 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 SNRNP35Q16560 246 aaKnown RBP14.59□□□□□ -0.07
HMGB1-202ENST00000339872 TDRD12Q587J7 1177 aaKnown RBP14.59□□□□□ -0.07
HMGB1-202ENST00000339872 CBWD2Q8IUF1 395 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 TRAPPC12Q8WVT3 735 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 DEF6Q9H4E7 631 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 SUGCTQ9HAC7 445 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 PHLPP2Q6ZVD8 1323 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 UQCRHLA0A096LP55 91 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 EIF3CLB5ME19 914 aaKnown RBP14.59□□□□□ -0.07
HMGB1-202ENST00000339872 TULP1O00294 542 aaPredicted RBP14.59□□□□□ -0.07
HMGB1-202ENST00000339872 LGALS2P05162 132 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 UQCRHP07919 91 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 LRRC71Q8N4P6 559 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 PPTC7Q8NI37 304 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 AFG1LQ8WV93 481 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 SYN2Q92777 582 aaPredicted RBP14.59□□□□□ -0.07
HMGB1-202ENST00000339872 SPAG5Q96R06 1193 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 EIF3CQ99613 913 aaKnown RBP14.59□□□□□ -0.07
HMGB1-202ENST00000339872 ABHD16BQ9H3Z7 469 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 SIX2Q9NPC8 291 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 ERAP1Q9NZ08 941 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 TLL2Q9Y6L7 1015 aa14.59□□□□□ -0.07
HMGB1-202ENST00000339872 K7ERI5 159 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 EIF4A3P38919 411 aaKnown RBP14.58□□□□□ -0.08
HMGB1-202ENST00000339872 KRT83P78385 493 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 ACVR2BQ13705 512 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 MYRIPQ8NFW9 859 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 PLEKHO2Q8TD55 490 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 TCP11Q8WWU5 503 aa14.58□□□□□ -0.08
HMGB1-202ENST00000339872 PRPF31Q8WWY3 499 aaKnown RBP14.58□□□□□ -0.08
HMGB1-202ENST00000339872 IRX2Q9BZI1 471 aaPredicted RBP14.58□□□□□ -0.08
HMGB1-202ENST00000339872 ABT1Q9ULW3 272 aaKnown RBP14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms