RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 NMT1P30419 496 aaKnown RBP24.45■■□□□ 1.5
SDC3-202ENST00000339394 SARSP49591 514 aaKnown RBP24.45■■□□□ 1.5
SDC3-202ENST00000339394 RGS19P49795 217 aa24.45■■□□□ 1.5
SDC3-202ENST00000339394 NT5DC1Q5TFE4 455 aa24.45■■□□□ 1.5
SDC3-202ENST00000339394 ZNF720Q7Z2F6 126 aa24.45■■□□□ 1.5
SDC3-202ENST00000339394 GSDMAQ96QA5 445 aa24.45■■□□□ 1.5
SDC3-202ENST00000339394 C2orf40Q9H1Z8 148 aa24.45■■□□□ 1.5
SDC3-202ENST00000339394 EXOC1Q9NV70 894 aa24.45■■□□□ 1.5
SDC3-202ENST00000339394 MAPTP10636 758 aaKnown RBP24.44■■□□□ 1.5
SDC3-202ENST00000339394 GHRP10912 638 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 LPIN1Q14693 890 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 KCNB1Q14721 858 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 MFSD5Q6N075 450 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 HAUS6Q7Z4H7 955 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 SRGAP1Q7Z6B7 1085 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 ZBTB8OSQ8IWT0 167 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 FGFBP2Q9BYJ0 223 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 INO80BQ9C086 356 aaPredicted RBP24.44■■□□□ 1.5
SDC3-202ENST00000339394 KIAA1468Q9P260 1216 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 NOC2LQ9Y3T9 749 aaKnown RBP24.44■■□□□ 1.5
SDC3-202ENST00000339394 SQORQ9Y6N5 450 aa24.44■■□□□ 1.5
SDC3-202ENST00000339394 INO80B-WBP1J3KQ70 363 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 K7ENM7 598 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 NBNO60934 754 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 RHOBTB3O94955 611 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 SYN1P17600 705 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 EFNA5P52803 228 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 MBTD1Q05BQ5 628 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 SKOR2Q2VWA4 1001 aaPredicted RBP24.43■■□□□ 1.5
SDC3-202ENST00000339394 FAM26FQ5R3K3 315 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 SLC17A8Q8NDX2 589 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 CCDC47Q96A33 483 aaKnown RBP24.43■■□□□ 1.5
SDC3-202ENST00000339394 AGO3Q9H9G7 860 aaKnown RBP24.43■■□□□ 1.5
SDC3-202ENST00000339394 TMEM63CQ9P1W3 806 aa24.43■■□□□ 1.5
SDC3-202ENST00000339394 ZMYND8Q9ULU4 1186 aaPredicted RBP24.43■■□□□ 1.5
SDC3-202ENST00000339394 DENND3A2RUS2 1198 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 RPS6KA5O75582 802 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 PARNO95453 639 aaKnown RBP24.42■■□□□ 1.5
SDC3-202ENST00000339394 CASP5P51878 434 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 STK4Q13043 487 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 CAVIN1Q6NZI2 390 aaKnown RBP24.42■■□□□ 1.5
SDC3-202ENST00000339394 USP38Q8NB14 1042 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 GLIS3Q8NEA6 775 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 ST6GALNAC4Q9H4F1 302 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 SLC39A2Q9NP94 309 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 RMND1Q9NWS8 449 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 H0YCG3 227 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 K7ERI5 159 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 FGFR4P22455 802 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 PSMD2Q13200 908 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 ZC2HC1CQ53FD0 456 aaPredicted RBP24.42■■□□□ 1.5
SDC3-202ENST00000339394 CCDC183Q5T5S1 534 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 TSHZ1Q6ZSZ6 1077 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 TAS1R3Q7RTX0 852 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 FAM228AQ86W67 206 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 KCNN1Q92952 543 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 CCDC113Q9H0I3 377 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 FZD8Q9H461 694 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 TMEM134Q9H6X4 195 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 NR2E3Q9Y5X4 410 aa24.42■■□□□ 1.5
SDC3-202ENST00000339394 ALPK3Q96L96 1907 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 GCNT3O95395 438 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 CSF2RAP15509 400 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 CD52P31358 61 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 GTF2BQ00403 316 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 MAPK6Q16659 721 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 TMEM199Q8N511 208 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 BADQ92934 168 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 STRA6Q9BX79 667 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 PADI3Q9ULW8 664 aa24.41■■□□□ 1.5
SDC3-202ENST00000339394 PPP1R37O75864 691 aa24.4■■□□□ 1.5
SDC3-202ENST00000339394 MYBP10242 640 aa24.4■■□□□ 1.5
SDC3-202ENST00000339394 SCP2P22307 547 aa24.4■■□□□ 1.5
SDC3-202ENST00000339394 SFPQP23246 707 aaKnown RBP eCLIP24.4■■□□□ 1.5
SDC3-202ENST00000339394 ISM2Q6H9L7 571 aa24.4■■□□□ 1.5
SDC3-202ENST00000339394 KIAA0895Q8NCT3 520 aa24.4■■□□□ 1.5
SDC3-202ENST00000339394 PRMT7Q9NVM4 692 aaPredicted RBP24.4■■□□□ 1.5
SDC3-202ENST00000339394 MAN1B1Q9UKM7 699 aa24.4■■□□□ 1.5
SDC3-202ENST00000339394 ST3GAL5Q9UNP4 418 aa24.4■■□□□ 1.5
SDC3-202ENST00000339394 PCDHB13Q9Y5F0 798 aa24.4■■□□□ 1.5
SDC3-202ENST00000339394 GPR182O15218 404 aa24.39■■□□□ 1.5
SDC3-202ENST00000339394 CXCL10P02778 98 aa24.39■■□□□ 1.5
SDC3-202ENST00000339394 RFC2P35250 354 aa24.39■■□□□ 1.5
SDC3-202ENST00000339394 NFX1Q12986 1120 aaKnown RBP24.39■■□□□ 1.5
SDC3-202ENST00000339394 PCBP1Q15365 356 aaKnown RBP eCLIP24.39■■□□□ 1.5
SDC3-202ENST00000339394 AMHR2Q16671 573 aa24.39■■□□□ 1.5
SDC3-202ENST00000339394 CATSPER4Q7RTX7 472 aa24.39■■□□□ 1.5
SDC3-202ENST00000339394 DEFB128Q7Z7B8 93 aa24.39■■□□□ 1.5
SDC3-202ENST00000339394 SYAP1Q96A49 352 aaPredicted RBP24.39■■□□□ 1.5
SDC3-202ENST00000339394 VWCEQ96DN2 955 aa24.39■■□□□ 1.5
SDC3-202ENST00000339394 IFIH1Q9BYX4 1025 aaKnown RBP24.39■■□□□ 1.5
SDC3-202ENST00000339394 TBX20Q9UMR3 447 aa24.39■■□□□ 1.5
SDC3-202ENST00000339394 PHLPP2Q6ZVD8 1323 aa24.39■■□□□ 1.49
SDC3-202ENST00000339394 BIN1O00499 593 aa24.38■■□□□ 1.49
SDC3-202ENST00000339394 ACKR2O00590 384 aa24.38■■□□□ 1.49
SDC3-202ENST00000339394 PRKCBP05771 671 aa24.38■■□□□ 1.49
SDC3-202ENST00000339394 PAK2Q13177 524 aa24.38■■□□□ 1.49
SDC3-202ENST00000339394 FAM187BQ17R55 369 aa24.38■■□□□ 1.49
SDC3-202ENST00000339394 RBM43Q6ZSC3 357 aaKnown RBP24.38■■□□□ 1.49
SDC3-202ENST00000339394 EPM2AIP1Q7L775 607 aaPredicted RBP24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms