RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 ABCB4P21439 1286 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 SF3A3Q12874 501 aaKnown RBP eCLIP16.85■□□□□ 0.292e-6■■□□□ 12.5
SHROOM1-201ENST00000319854 JDP2Q8WYK2 163 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 IQCDQ96DY2 449 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 LRRC4CQ9HCJ2 640 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 TCEAL9Q9UHQ7 104 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 TESPA1A2RU30 521 aaPredicted RBP16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 HMGB1P1B2RPK0 211 aaPredicted RBP16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 K7ENM7 598 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 SCTRP47872 440 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 MTMR2Q13614 643 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 CFAP221Q4G0U5 840 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 GLE1Q53GS7 698 aaKnown RBP16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 PPP4R3CPQ6ZMV5 832 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 HS2ST1Q7LGA3 356 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 ZSWIM2Q8NEG5 633 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 U2AF1L4Q8WU68 220 aaKnown RBP16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 SLC5A5Q92911 643 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 WNK4Q96J92 1243 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 SEC16BQ96JE7 1060 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 SLC12A6Q9UHW9 1150 aa16.85■□□□□ 0.29
SHROOM1-201ENST00000319854 SSU72P8A0A1W2PR75 194 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 DCDC2CA8MYV0 355 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 RAD51CO43502 376 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 RTN2O75298 545 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 FRMD5Q7Z6J6 570 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 NACC1Q96RE7 527 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 TRAPPC3O43617 180 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 CLNS1AP54105 237 aaKnown RBP16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 UAP1Q16222 522 aaPredicted RBP16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 CBWD6Q4V339 395 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 CBWD3Q5JTY5 395 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 CBWD5Q5RIA9 395 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 NAIF1Q69YI7 327 aaPredicted RBP16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 DDX42Q86XP3 938 aaKnown RBP eCLIP16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 KLHL7Q8IXQ5 586 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 TAAR1Q96RJ0 339 aa16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 BCCIPQ9P287 314 aaKnown RBP eCLIP16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 CHORDC1Q9UHD1 332 aaPredicted RBP16.84■□□□□ 0.29
SHROOM1-201ENST00000319854 GOLGA8IPA6NC78 632 aa16.83■□□□□ 0.29
SHROOM1-201ENST00000319854 GOLGA8JA6NMD2 632 aa16.83■□□□□ 0.29
SHROOM1-201ENST00000319854 H0YGN5 161 aa16.83■□□□□ 0.29
SHROOM1-201ENST00000319854 LCA5LO95447 670 aa16.83■□□□□ 0.29
SHROOM1-201ENST00000319854 DRP2Q13474 957 aa16.83■□□□□ 0.29
SHROOM1-201ENST00000319854 PADI6Q6TGC4 694 aa16.83■□□□□ 0.29
SHROOM1-201ENST00000319854 IRF2BP2Q7Z5L9 587 aa16.83■□□□□ 0.29
SHROOM1-201ENST00000319854 KIFC3Q9BVG8 833 aa16.83■□□□□ 0.29
SHROOM1-201ENST00000319854 NFS1Q9Y697 457 aa16.83■□□□□ 0.29
SHROOM1-201ENST00000319854 KCNK3O14649 394 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 HSD17B3P37058 310 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 NPEPPSP55786 919 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 SOX10P56693 466 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 SPP2Q13103 211 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 EPHA7Q15375 998 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 PLA2G4FQ68DD2 849 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 ALKBH5Q6P6C2 394 aaKnown RBP16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 FEM1BQ9UK73 627 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 PHF20L1A8MW92 1017 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 CIAPIN1Q6FI81 312 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 ZNF720Q7Z2F6 126 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 TBC1D31Q96DN5 1066 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 FAM84AQ96KN4 292 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 MXRA8Q9BRK3 442 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 ACTR5Q9H9F9 607 aaPredicted RBP16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 LUC7LQ9NQ29 371 aaKnown RBP16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 FRMD4BQ9Y2L6 1034 aa16.83■□□□□ 0.28
SHROOM1-201ENST00000319854 ZMYM2Q9UBW7 1377 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 PSMC2P35998 433 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 RPS6P62753 249 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 DLG4P78352 724 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 PPP2R5CQ13362 524 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 GLYCTKQ8IVS8 523 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 RAPGEF5Q92565 580 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 EHMT1Q9H9B1 1298 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 TUFT1Q9NNX1 390 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 C10orf71Q711Q0 1435 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 ATP9AO75110 1047 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 ECHS1P30084 290 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 HSPA9P38646 679 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 MARSP56192 900 aaKnown RBP16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 AGPAT3Q9NRZ7 376 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 ZNF536O15090 1300 aa16.82■□□□□ 0.28
SHROOM1-201ENST00000319854 FLT3P36888 993 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 ERVK-9P63128 1117 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 MTMR1Q13613 665 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 CRYMQ14894 314 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 NAB2Q15742 525 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 FAM160B2Q86V87 743 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 EDEM3Q9BZQ6 932 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 NUCKS1Q9H1E3 243 aaKnown RBP16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 NEUROG2Q9H2A3 272 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 ZHX2Q9Y6X8 837 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 GRID2IPA4D2P6 1211 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 PJA2O43164 708 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 NBPF12Q5TAG4 269 aaPredicted RBP16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 ADAT2Q7Z6V5 191 aaKnown RBP16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 PSMD1Q99460 953 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 AP1M1Q9BXS5 423 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 AIPL1Q9NZN9 384 aa16.81■□□□□ 0.28
SHROOM1-201ENST00000319854 PPP1R12AO14974 1030 aaPredicted RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms