RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 POMGNT1Q8WZA1 660 aa18.02■□□□□ 0.48
USP4-201ENST00000265560 BAP1Q92560 729 aa18.02■□□□□ 0.48
USP4-201ENST00000265560 CCDC51Q96ER9 411 aa18.02■□□□□ 0.48
USP4-201ENST00000265560 NHEJ1Q9H9Q4 299 aaPredicted RBP18.02■□□□□ 0.48
USP4-201ENST00000265560 ZBTB42B2RXF5 422 aa18.02■□□□□ 0.47
USP4-201ENST00000265560 CCDC175P0C221 793 aa18.02■□□□□ 0.47
USP4-201ENST00000265560 SMPD1P17405 629 aa18.02■□□□□ 0.47
USP4-201ENST00000265560 CRHR2Q13324 411 aa18.02■□□□□ 0.47
USP4-201ENST00000265560 MKRN4PQ13434 485 aaPredicted RBP18.02■□□□□ 0.47
USP4-201ENST00000265560 RAPGEF1Q13905 1077 aa18.02■□□□□ 0.47
USP4-201ENST00000265560 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.02■□□□□ 0.47
USP4-201ENST00000265560 CDR2LQ86X02 465 aaPredicted RBP18.02■□□□□ 0.47
USP4-201ENST00000265560 REXO2Q9Y3B8 237 aaKnown RBP18.02■□□□□ 0.47
USP4-201ENST00000265560 FHOD1Q9Y613 1164 aa18.02■□□□□ 0.47
USP4-201ENST00000265560 CLCN3P51790 818 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 DNAAF5Q86Y56 855 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 MORC4Q8TE76 937 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 KATNBL1Q9H079 304 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 TOPORSQ9NS56 1045 aaPredicted RBP18.01■□□□□ 0.47
USP4-201ENST00000265560 ARHGAP20Q9P2F6 1191 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 ANKFY1Q9P2R3 1169 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 FAM184BQ9ULE4 1060 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 NDUFA10O95299 355 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 TARBP2Q15633 366 aaKnown RBP18.01■□□□□ 0.47
USP4-201ENST00000265560 LMBRD2Q68DH5 695 aaPredicted RBP18.01■□□□□ 0.47
USP4-201ENST00000265560 XXYLT1Q8NBI6 393 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 WDR24Q96S15 920 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 NIFKQ9BYG3 293 aaKnown RBP18.01■□□□□ 0.47
USP4-201ENST00000265560 ZNHIT6Q9NWK9 470 aaKnown RBP18.01■□□□□ 0.47
USP4-201ENST00000265560 ZSCAN12O43309 604 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 ACVR2BQ13705 512 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 KCNV1Q6PIU1 500 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 RHPN2Q8IUC4 686 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 ARHGAP39Q9C0H5 1083 aa18.01■□□□□ 0.47
USP4-201ENST00000265560 METTL14Q9HCE5 456 aaKnown RBP18.01■□□□□ 0.47
USP4-201ENST00000265560 MANSC4A6NHS7 340 aaPredicted RBP18■□□□□ 0.47
USP4-201ENST00000265560 RIOK3O14730 519 aaKnown RBP18■□□□□ 0.47
USP4-201ENST00000265560 SLC16A3O15427 465 aaKnown RBP18■□□□□ 0.47
USP4-201ENST00000265560 TLR2O60603 784 aa18■□□□□ 0.47
USP4-201ENST00000265560 CTGFP29279 349 aa18■□□□□ 0.47
USP4-201ENST00000265560 MAPK4P31152 587 aa18■□□□□ 0.47
USP4-201ENST00000265560 PPP3CAQ08209 521 aa18■□□□□ 0.47
USP4-201ENST00000265560 BFSP1Q12934 665 aa18■□□□□ 0.47
USP4-201ENST00000265560 MAP4K3Q8IVH8 894 aa18■□□□□ 0.47
USP4-201ENST00000265560 RETREG2Q8NC44 543 aa18■□□□□ 0.47
USP4-201ENST00000265560 DEPTORQ8TB45 409 aa18■□□□□ 0.47
USP4-201ENST00000265560 TARS2Q9BW92 718 aaKnown RBP18■□□□□ 0.47
USP4-201ENST00000265560 NAA15Q9BXJ9 866 aaKnown RBP18■□□□□ 0.47
USP4-201ENST00000265560 DIS3Q9Y2L1 958 aaKnown RBP18■□□□□ 0.47
USP4-201ENST00000265560 UBE4BO95155 1302 aa18■□□□□ 0.47
USP4-201ENST00000265560 EMSYQ7Z589 1322 aa18■□□□□ 0.47
USP4-201ENST00000265560 MATR3P43243 847 aaKnown RBP eCLIP18■□□□□ 0.47
USP4-201ENST00000265560 FMO5P49326 533 aa18■□□□□ 0.47
USP4-201ENST00000265560 ACOT2P49753 483 aa18■□□□□ 0.47
USP4-201ENST00000265560 GNG11P61952 73 aa18■□□□□ 0.47
USP4-201ENST00000265560 CAPSQ13938 189 aa18■□□□□ 0.47
USP4-201ENST00000265560 TDRD12Q587J7 1177 aaKnown RBP18■□□□□ 0.47
USP4-201ENST00000265560 TRIM65Q6PJ69 517 aa18■□□□□ 0.47
USP4-201ENST00000265560 NLRP4Q96MN2 994 aa18■□□□□ 0.47
USP4-201ENST00000265560 FAM213AQ9BRX8 229 aa18■□□□□ 0.47
USP4-201ENST00000265560 NTPCRQ9BSD7 190 aaKnown RBP18■□□□□ 0.47
USP4-201ENST00000265560 TIPINQ9BVW5 301 aa18■□□□□ 0.47
USP4-201ENST00000265560 DUSP10Q9Y6W6 482 aa18■□□□□ 0.47
USP4-201ENST00000265560 MKI67P46013 3256 aaKnown RBP17.99■□□□□ 0.47
USP4-201ENST00000265560 PASKQ96RG2 1323 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 FAM155AB1AL88 458 aaPredicted RBP17.99■□□□□ 0.47
USP4-201ENST00000265560 K7ERI5 159 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 DYNC1LI2O43237 492 aaPredicted RBP17.99■□□□□ 0.47
USP4-201ENST00000265560 LGALS2P05162 132 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 DLATP10515 647 aaKnown RBP17.99■□□□□ 0.47
USP4-201ENST00000265560 ZBTB41Q5SVQ8 909 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 AFAP1L1Q8TED9 768 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 ATP8B4Q8TF62 1192 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 SLC10A3P09131 477 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 ARL2P36404 184 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 EIF4A3P38919 411 aaKnown RBP17.99■□□□□ 0.47
USP4-201ENST00000265560 SNRNP35Q16560 246 aaKnown RBP17.99■□□□□ 0.47
USP4-201ENST00000265560 RNF149Q8NC42 400 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 ARHGAP28Q9P2N2 729 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 PLAGL2Q9UPG8 496 aa17.99■□□□□ 0.47
USP4-201ENST00000265560 RCCD1A6NED2 376 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 GH1P01241 217 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 INSRRP14616 1297 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 UCHL3P15374 230 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 GBP6Q6ZN66 633 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 GOLGA5Q8TBA6 731 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 SPIRE2Q8WWL2 714 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 BBXQ8WY36 941 aaPredicted RBP17.98■□□□□ 0.47
USP4-201ENST00000265560 HAPLN2Q9GZV7 340 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 ZNF263O14978 683 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 AOC2O75106 756 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 MAFO75444 373 aaPredicted RBP17.98■□□□□ 0.47
USP4-201ENST00000265560 KRT13P13646 458 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 KCNJ6P48051 423 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 LIG4P49917 911 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 PDXDC1Q6P996 788 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 CCDC42Q96M95 316 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 SMARCAD1Q9H4L7 1026 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 GUCA1BQ9UMX6 200 aa17.98■□□□□ 0.47
USP4-201ENST00000265560 KAT6AQ92794 2004 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms