RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 MCPH1Q8NEM0 835 aa25.49■■□□□ 1.67
LSM4-201ENST00000252816 FAM105AQ9NUU6 356 aa25.49■■□□□ 1.67
LSM4-201ENST00000252816 DDX19AQ9NUU7 478 aaKnown RBP25.49■■□□□ 1.67
LSM4-201ENST00000252816 STK24Q9Y6E0 443 aa25.49■■□□□ 1.67
LSM4-201ENST00000252816 MEIS3P2A8K0S8 358 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 ITGB1P05556 798 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 CYP11B2P19099 503 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 PDCP20941 246 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 TFF2Q03403 129 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 MBTD1Q05BQ5 628 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 CAMK1Q14012 370 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 LONRF3Q496Y0 759 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 SPOUT1Q5T280 376 aaKnown RBP25.48■■□□□ 1.67
LSM4-201ENST00000252816 KRT79Q5XKE5 535 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 HELQQ8TDG4 1101 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 ATXN2LQ8WWM7 1075 aaKnown RBP25.48■■□□□ 1.67
LSM4-201ENST00000252816 LPPQ93052 612 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 LMAN2LQ9H0V9 348 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 BHMT2Q9H2M3 363 aa25.48■■□□□ 1.67
LSM4-201ENST00000252816 INO80B-WBP1J3KQ70 363 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 TSPAN1O60635 241 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 ZNF623O75123 536 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 SYT1P21579 422 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 DNAJB1P25685 340 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 TIGD5Q53EQ6 642 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 NAALADL2Q58DX5 795 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 UBXN11Q5T124 520 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 ABI1Q8IZP0 508 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 SPPL3Q8TCT6 385 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 SNX21Q969T3 373 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 NFKBIZQ9BYH8 718 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 PCDHB2Q9Y5E7 798 aa25.47■■□□□ 1.67
LSM4-201ENST00000252816 BRWD1Q9NSI6 2320 aa25.46■■□□□ 1.67
LSM4-201ENST00000252816 VWA3AA6NCI4 1184 aa25.46■■□□□ 1.67
LSM4-201ENST00000252816 CSPG5O95196 566 aa25.46■■□□□ 1.67
LSM4-201ENST00000252816 AMHR2Q16671 573 aa25.46■■□□□ 1.67
LSM4-201ENST00000252816 ARL6IP4Q66PJ3 421 aaKnown RBP25.46■■□□□ 1.67
LSM4-201ENST00000252816 KCNK18Q7Z418 384 aa25.46■■□□□ 1.67
LSM4-201ENST00000252816 COLGALT1Q8NBJ5 622 aa25.46■■□□□ 1.67
LSM4-201ENST00000252816 BSNDQ8WZ55 320 aa25.46■■□□□ 1.67
LSM4-201ENST00000252816 COL25A1Q9BXS0 654 aaPredicted RBP25.46■■□□□ 1.67
LSM4-201ENST00000252816 POLD4Q9HCU8 107 aa25.46■■□□□ 1.67
LSM4-201ENST00000252816 CUL9Q8IWT3 2517 aa25.46■■□□□ 1.67
LSM4-201ENST00000252816 E9PMD0 336 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 DLL1O00548 723 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 ERLIN2O94905 339 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 SKIP12755 728 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 RAB27AP51159 221 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 MRPS5P82675 430 aaKnown RBP25.45■■□□□ 1.66
LSM4-201ENST00000252816 PCBP1Q15365 356 aaKnown RBP eCLIP25.45■■□□□ 1.66
LSM4-201ENST00000252816 TCEAL5Q5H9L2 206 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 TJAP1Q5JTD0 557 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 LRRC43Q8N309 656 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 HLA-CQ95604 372 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 CPB2Q96IY4 423 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 ASB2Q96Q27 587 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 NSUN3Q9H649 340 aaKnown RBP25.45■■□□□ 1.66
LSM4-201ENST00000252816 AAASQ9NRG9 546 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 PCDHB12Q9Y5F1 795 aa25.45■■□□□ 1.66
LSM4-201ENST00000252816 ATG2AQ2TAZ0 1938 aa25.44■■□□□ 1.66
LSM4-201ENST00000252816 LRRIQ4A6NIV6 560 aa25.44■■□□□ 1.66
LSM4-201ENST00000252816 COG5Q9UP83 839 aa25.44■■□□□ 1.66
LSM4-201ENST00000252816 DNM3Q9UQ16 869 aa25.44■■□□□ 1.66
LSM4-201ENST00000252816 EYA4O95677 639 aa25.43■■□□□ 1.66
LSM4-201ENST00000252816 LAG3P18627 525 aa25.43■■□□□ 1.66
LSM4-201ENST00000252816 RESTQ13127 1097 aa25.43■■□□□ 1.66
LSM4-201ENST00000252816 ZRSR1Q15695 479 aaKnown RBP25.43■■□□□ 1.66
LSM4-201ENST00000252816 CDCA2Q69YH5 1023 aaPredicted RBP25.43■■□□□ 1.66
LSM4-201ENST00000252816 AGMOQ6ZNB7 445 aa25.43■■□□□ 1.66
LSM4-201ENST00000252816 MRPL10Q7Z7H8 261 aaKnown RBP25.43■■□□□ 1.66
LSM4-201ENST00000252816 POF1BQ8WVV4 589 aa25.43■■□□□ 1.66
LSM4-201ENST00000252816 PNMA5Q96PV4 448 aa25.43■■□□□ 1.66
LSM4-201ENST00000252816 B4GALT5O43286 388 aa25.42■■□□□ 1.66
LSM4-201ENST00000252816 OFD1O75665 1012 aa25.42■■□□□ 1.66
LSM4-201ENST00000252816 FGF18O76093 207 aa25.42■■□□□ 1.66
LSM4-201ENST00000252816 ARF4P18085 180 aaPredicted RBP25.42■■□□□ 1.66
LSM4-201ENST00000252816 AXLP30530 894 aa25.42■■□□□ 1.66
LSM4-201ENST00000252816 PBX3P40426 434 aa25.42■■□□□ 1.66
LSM4-201ENST00000252816 SF3A1Q15459 793 aaKnown RBP25.42■■□□□ 1.66
LSM4-201ENST00000252816 HYIQ5T013 277 aa25.42■■□□□ 1.66
LSM4-201ENST00000252816 NOTUMQ6P988 496 aa25.42■■□□□ 1.66
LSM4-201ENST00000252816 EIF2AQ9BY44 585 aaKnown RBP25.42■■□□□ 1.66
LSM4-201ENST00000252816 MTMR6Q9Y217 621 aa25.42■■□□□ 1.66
LSM4-201ENST00000252816 TTC28Q96AY4 2481 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 IRS1P35568 1242 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 GRIN1Q05586 938 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 FAM173BQ6P4H8 233 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 KCNT2Q6UVM3 1135 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 GLB1LQ6UWU2 654 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 THNSL1Q8IYQ7 743 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 SMG8Q8ND04 991 aaKnown RBP25.41■■□□□ 1.66
LSM4-201ENST00000252816 PGBD4Q96DM1 585 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 CCDC51Q96ER9 411 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 PLIN2Q99541 437 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 RUSC1Q9BVN2 902 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 MRPL9Q9BYD2 267 aaKnown RBP25.41■■□□□ 1.66
LSM4-201ENST00000252816 UBE2ZQ9H832 354 aaPredicted RBP25.41■■□□□ 1.66
LSM4-201ENST00000252816 INPP5FQ9Y2H2 1132 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 CLIC4Q9Y696 253 aa25.41■■□□□ 1.66
LSM4-201ENST00000252816 PLXNA4Q9HCM2 1894 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms