RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GUCY1B2O75343 617 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 FAM58BPP0C7Q3 252 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PSMC2P35998 433 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 SNX17Q15036 470 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ADCK5Q3MIX3 580 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 EFL1Q7Z2Z2 1120 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 FNBP1Q96RU3 617 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CACYBPQ9HB71 228 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 EURLQ9NYK6 297 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 SUN2Q9UH99 717 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 FANCAO15360 1455 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 NUP153P49790 1475 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 H3BQF6 201 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 M0R3G1 203 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TJP3O95049 919 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 LAMC2Q13753 1193 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 NR1I3Q14994 352 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 GEN1Q17RS7 908 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 RBM20Q5T481 1227 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TRIM72Q6ZMU5 477 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ADCK1Q86TW2 530 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PRPF18Q99633 342 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 SNX25Q9H3E2 840 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CHMP2BQ9UQN3 213 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 A0A0G2JND7 137 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 H7C0S8 307 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 STX7O15400 261 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ASNA1O43681 348 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TRIP10Q15642 601 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 THEMISQ8N1K5 641 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF277Q9NRM2 450 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 C1orf112Q9NSG2 853 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 R3HDM2Q9Y2K5 976 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PYGMP11217 842 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 KIAA1755Q5JYT7 1200 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 RGS9BPQ6ZS82 235 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 GUF1Q8N442 669 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ATP8B4Q8TF62 1192 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 OTUD5Q96G74 571 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ANKRD36BP1Q96IX9 119 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CCPG1Q9ULG6 757 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PARNO95453 639 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 FOSP01100 380 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CHN1P15882 459 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 GSTT1P30711 240 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 TAP1Q03518 808 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 PTK2Q05397 1052 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ADAM9Q13443 819 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ENOSF1Q7L5Y1 443 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 POGZQ7Z3K3 1410 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 FANCEQ9HB96 536 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 NSFL1CQ9UNZ2 370 aaKnown RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 MOCS3O95396 460 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 MYL4P12829 197 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CYP7A1P22680 504 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ST13P5Q8NFI4 369 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-220ENST00000641603 DACH2Q96NX9 599 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 ZWILCHQ9H900 591 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 CLIC4Q9Y696 253 aa4.97□□□□□ -1.61
SCN1A-220ENST00000641603 RCN1Q15293 331 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 TCHHL1Q5QJ38 904 aaPredicted RBP4.96□□□□□ -1.61
SCN1A-220ENST00000641603 TLK2Q86UE8 772 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 KIAA0825Q8IV33 1275 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 GRPEL2Q8TAA5 225 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 RNF217Q8TC41 542 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 SEPT1Q8WYJ6 367 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 PAGE5Q96GU1 130 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 FAM227BQ96M60 508 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 KLC2Q9H0B6 622 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 NCOA5Q9HCD5 579 aaKnown RBP4.96□□□□□ -1.61
SCN1A-220ENST00000641603 NLRC4Q9NPP4 1024 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 ABCA9Q8IUA7 1624 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 TRAPPC3O43617 180 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 RUNX1T1Q06455 604 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 TFCP2Q12800 502 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 PDCD4Q53EL6 469 aaKnown RBP4.96□□□□□ -1.61
SCN1A-220ENST00000641603 TAF1BQ53T94 588 aaPredicted RBP4.96□□□□□ -1.61
SCN1A-220ENST00000641603 TRAF7Q6Q0C0 670 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 FANCBQ8NB91 859 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 PYROXD1Q8WU10 500 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 ABHD8Q96I13 439 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 COQ7Q99807 217 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 UVRAGQ9P2Y5 699 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 STX8Q9UNK0 236 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 CDY2AQ9Y6F7 541 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 CDY1Q9Y6F8 540 aa4.96□□□□□ -1.61
SCN1A-220ENST00000641603 A0A0A6YYK5 440 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ANGPT2O15123 496 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 SRGNP10124 158 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 SLC45A4Q5BKX6 768 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ZNF555Q8NEP9 628 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 CHAMP1Q96JM3 812 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 TNNQ9UQP3 1299 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 SLC16A3O15427 465 aaKnown RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 OCM2P0CE71 109 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 OCMP0CE72 109 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-220ENST00000641603 MYL6BP14649 208 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 RAB25P57735 213 aa4.96□□□□□ -1.62
SCN1A-220ENST00000641603 ELF3P78545 371 aaPredicted RBP4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms