RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TLR2O60603 784 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 SCNN1DP51172 638 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 NPY5RQ15761 445 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 SLC30A9Q6PML9 568 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 CD302Q8IX05 232 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 MREGQ8N565 214 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 KIFAP3Q92845 792 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 IRAK4Q9NWZ3 460 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 TRIM33Q9UPN9 1127 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 MST1RQ04912 1400 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 GOLGA8IPA6NC78 632 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 RASSF10A6NK89 507 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 GOLGA8JA6NMD2 632 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 CIB2O75838 187 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 RASSF9O75901 435 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 HSPA6P17066 643 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 TARSP26639 723 aaKnown RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 NMT1P30419 496 aaKnown RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 MAPK4P31152 587 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 DNAJC3Q13217 504 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 PPP1R21Q6ZMI0 780 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 PPP4R3CPQ6ZMV5 832 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 TRIM59Q8IWR1 403 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 RILPQ96NA2 401 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 NYXQ9GZU5 481 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 THAP2Q9H0W7 228 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 DHX36Q9H2U1 1008 aaKnown RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 SUCLA2Q9P2R7 463 aaPredicted RBP11.86□□□□□ -0.51
CLN3-244ENST00000636147 PPP1R9AQ9ULJ8 1098 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 PCDHGC5Q9Y5F6 944 aa11.86□□□□□ -0.51
CLN3-244ENST00000636147 HARSP12081 509 aaKnown RBP11.85□□□□□ -0.51
CLN3-244ENST00000636147 SOX5P35711 763 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 CTCFP49711 727 aaPredicted RBP11.85□□□□□ -0.51
CLN3-244ENST00000636147 RWDD2BP57060 319 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 CFAP157Q5JU67 520 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 RNF207Q6ZRF8 634 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 APBB1IPQ7Z5R6 666 aaPredicted RBP11.85□□□□□ -0.51
CLN3-244ENST00000636147 CTAGE3PQ8IX95 158 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 SLFN12Q8IYM2 578 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 SPICE1Q8N0Z3 855 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 PNMA5Q96PV4 448 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 TYW1Q9NV66 732 aaKnown RBP11.85□□□□□ -0.51
CLN3-244ENST00000636147 RGL1Q9NZL6 768 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 DLGAP2Q9P1A6 1054 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 TMEM94Q12767 1356 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 ARHGAP42A6NI28 874 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 CLDN3O15551 220 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 GAS7O60861 476 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 PON1P27169 355 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 DHX34Q14147 1143 aaKnown RBP11.85□□□□□ -0.51
CLN3-244ENST00000636147 RHOT2Q8IXI1 618 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 RPUSD2Q8IZ73 545 aaKnown RBP11.85□□□□□ -0.51
CLN3-244ENST00000636147 C4orf33Q8N1A6 199 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 C4orf32Q8N8J7 132 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 SYN2Q92777 582 aaPredicted RBP11.85□□□□□ -0.51
CLN3-244ENST00000636147 IL17RBQ9NRM6 502 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 ABCC6O95255 1503 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 KDM4FA0A1W2PPD8 638 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 SKIP12755 728 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 HNRNPH3P31942 346 aaKnown RBP11.85□□□□□ -0.51
CLN3-244ENST00000636147 MAPK7Q13164 816 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 ERICH1Q86X53 443 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 C3orf20Q8ND61 904 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 HAUS1Q96CS2 278 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 ANO3Q9BYT9 981 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 SAYSD1Q9NPB0 183 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 HAO1Q9UJM8 370 aa11.85□□□□□ -0.51
CLN3-244ENST00000636147 ZC3H4Q9UPT8 1303 aaKnown RBP11.85□□□□□ -0.51
CLN3-244ENST00000636147 CFAP69A5D8W1 941 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 TNFRSF8P28908 595 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 GPC5P78333 572 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 KRT17Q04695 432 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 PDIA5Q14554 519 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 RIC1Q4ADV7 1423 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 ZC2HC1CQ53FD0 456 aaPredicted RBP11.84□□□□□ -0.51
CLN3-244ENST00000636147 ASPRV1Q53RT3 343 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 ERMARDQ5T6L9 678 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 RCSD1Q6JBY9 416 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 TMEM154Q6P9G4 183 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 LRRC55Q6ZSA7 311 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 ZNF34Q8IZ26 560 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 FAM196BA6NMK8 535 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 RSPH10B2B2RC85 870 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 GOLGA8SH3BPF8 625 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 GOLGA8MH3BSY2 632 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 RSPH10BP0C881 870 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 HGSNATQ68CP4 663 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 SCFD1Q8WVM8 642 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 BTBD6Q96KE9 485 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 REEP2Q9BRK0 252 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 KCNG1Q9UIX4 513 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 ANAPC7Q9UJX3 599 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 PNMA3Q9UL41 463 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 AGTPBP1Q9UPW5 1226 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 A8MUI8 341 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 MIF4GDA9UHW6 222 aaKnown RBP11.84□□□□□ -0.51
CLN3-244ENST00000636147 COMTP21964 271 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 PHLDB3Q6NSJ2 640 aa11.84□□□□□ -0.51
CLN3-244ENST00000636147 DPH6Q7L8W6 267 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms