RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ARL4CP56559 192 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 KRT76Q01546 638 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 MAPK6Q16659 721 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 FIS1Q9Y3D6 152 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 H0Y3Z8 333 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 SMIM24O75264 130 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 HP1BP3Q5SSJ5 553 aaPredicted RBP14.99□□□□□ -0.01
CPSF1-212ENST00000616140 CCDC137Q6PK04 289 aaKnown RBP14.99□□□□□ -0.01
CPSF1-212ENST00000616140 RIN2Q8WYP3 895 aaPredicted RBP14.99□□□□□ -0.01
CPSF1-212ENST00000616140 SH2D3AQ9BRG2 576 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 SLITRK6Q9H5Y7 841 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 ATP6V0A4Q9HBG4 840 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 KIAA1586Q9HCI6 787 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 HPS5Q9UPZ3 1129 aa14.99□□□□□ -0.01
CPSF1-212ENST00000616140 TARSL2A2RTX5 802 aaKnown RBP14.98□□□□□ -0.01
CPSF1-212ENST00000616140 NFIXQ14938 502 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 SLC18A3Q16572 532 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 SPOPLQ6IQ16 392 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 MYLK4Q86YV6 388 aaPredicted RBP14.98□□□□□ -0.01
CPSF1-212ENST00000616140 RNPC3Q96LT9 517 aaKnown RBP14.98□□□□□ -0.01
CPSF1-212ENST00000616140 IPO11Q9UI26 975 aaKnown RBP14.98□□□□□ -0.01
CPSF1-212ENST00000616140 CHUKO15111 745 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 PFDN6O15212 129 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 GPSM2P81274 684 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 TMPRSS15P98073 1019 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 GUCY1A3Q02108 690 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 PDE1CQ14123 709 aaPredicted RBP14.98□□□□□ -0.01
CPSF1-212ENST00000616140 PDIA6Q15084 440 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 TMCO4Q5TGY1 634 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 SH2D3CQ8N5H7 860 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 MS4A14Q96JA4 679 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 MTMR4Q9NYA4 1195 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 HEY1Q9Y5J3 304 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 SRGAP2BP0DMP2 458 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 SKIP12755 728 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 NCF2P19878 526 aaPredicted RBP14.98□□□□□ -0.01
CPSF1-212ENST00000616140 SPP2Q13103 211 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 LRRC14Q15048 493 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 SIX6OS1Q8N1H7 587 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 ANKRD7Q92527 254 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 FAF2Q96CS3 445 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 FAM49AQ9H0Q0 323 aaPredicted RBP14.98□□□□□ -0.01
CPSF1-212ENST00000616140 TMEM60Q9H2L4 133 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 RNF146Q9NTX7 359 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 FNDC3AQ9Y2H6 1198 aaKnown RBP14.98□□□□□ -0.01
CPSF1-212ENST00000616140 PDXKO00764 312 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 TFDP2Q14188 446 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 HAUS6Q7Z4H7 955 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 OR6B3Q8NGW1 331 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 TRIM55Q9BYV6 548 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 PCSK1NQ9UHG2 260 aa14.98□□□□□ -0.01
CPSF1-212ENST00000616140 SETBP1Q9Y6X0 1596 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 MYMKA6NI61 221 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 STX1BP61266 288 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 CEP55Q53EZ4 464 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 FRMD5Q7Z6J6 570 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 N4BP2L2Q92802 583 aaPredicted RBP14.97□□□□□ -0.01
CPSF1-212ENST00000616140 LRGUKQ96M69 825 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 PPARGC1AQ9UBK2 798 aaKnown RBP14.97□□□□□ -0.01
CPSF1-212ENST00000616140 GABBR1Q9UBS5 961 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 ITIH6Q6UXX5 1313 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 SSU72P8A0A1W2PR75 194 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 COPEO14579 308 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 SOX5P35711 763 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 SNRNP48Q6IEG0 339 aaKnown RBP14.97□□□□□ -0.01
CPSF1-212ENST00000616140 EPM2AIP1Q7L775 607 aaPredicted RBP14.97□□□□□ -0.01
CPSF1-212ENST00000616140 NLRP14Q86W24 1093 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 SYT2Q8N9I0 419 aaPredicted RBP14.97□□□□□ -0.01
CPSF1-212ENST00000616140 NOA1Q8NC60 698 aaKnown RBP14.97□□□□□ -0.01
CPSF1-212ENST00000616140 TUBB6Q9BUF5 446 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 NPHP3-ACAD11A0A0J9YXS1 232 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 PLCB4Q15147 1175 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 ZNF34Q8IZ26 560 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 PRPF38AQ8NAV1 312 aaKnown RBP14.97□□□□□ -0.01
CPSF1-212ENST00000616140 NSUN6Q8TEA1 469 aaKnown RBP14.97□□□□□ -0.01
CPSF1-212ENST00000616140 SKA2Q8WVK7 121 aaPredicted RBP14.97□□□□□ -0.01
CPSF1-212ENST00000616140 C1orf54Q8WWF1 131 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 BAG5Q9UL15 447 aa14.97□□□□□ -0.01
CPSF1-212ENST00000616140 CFLARO15519 480 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 ECE2O60344 883 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 ZNF543Q08ER8 600 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 MUM1L1Q5H9M0 696 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 RC3H1Q5TC82 1133 aaKnown RBP14.96□□□□□ -0.01
CPSF1-212ENST00000616140 SWSAP1Q6NVH7 229 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 HIPK4Q8NE63 616 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 KAZALD1Q96I82 304 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 ZNF512BQ96KM6 892 aaPredicted RBP14.96□□□□□ -0.01
CPSF1-212ENST00000616140 TNS3Q68CZ2 1445 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 FAM187AA6NFU0 413 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 UBE2Q2LH0YL09 131 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 EYA4O95677 639 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 SLC4A1P02730 911 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 ZNF699Q32M78 642 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 SBK1Q52WX2 424 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 NYAP1Q6ZVC0 841 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 RPAINQ86UA6 219 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 RTKN2Q8IZC4 609 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 GIMAP8Q8ND71 665 aaPredicted RBP14.96□□□□□ -0.01
CPSF1-212ENST00000616140 C7orf25Q9BPX7 421 aa14.96□□□□□ -0.01
CPSF1-212ENST00000616140 NOP53Q9NZM5 478 aaKnown RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms