RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 FUT2Q10981 343 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 GIT2Q14161 759 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 ZNF746Q6NUN9 644 aaPredicted RBP12.51□□□□□ -0.41
VPS4B-202ENST00000588059 OTOP3Q7RTS5 596 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 GPR149Q86SP6 731 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 SGMS1Q86VZ5 419 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 SMAP1Q8IYB5 467 aaPredicted RBP12.51□□□□□ -0.41
VPS4B-202ENST00000588059 TMEM87AQ8NBN3 555 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 CRYGNQ8WXF5 182 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 IGSF21Q96ID5 467 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 FAM167AQ96KS9 214 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 LRRC2Q9BYS8 371 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 KCNK12Q9HB15 430 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 FBXL21Q9UKT6 434 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 OTOGLQ3ZCN5 2332 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 DNAH14Q0VDD8 3507 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 SMCO2A6NFE2 343 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 PSAPP07602 524 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 TMOD1P28289 359 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 PTPN14Q15678 1187 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 ZNF710Q8N1W2 664 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 ZNF577Q9BSK1 485 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 VN1R3Q9BXE9 311 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 DACT1Q9NYF0 836 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 GABBR1Q9UBS5 961 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 PCDHA10Q9Y5I2 948 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 CACNA1BQ00975 2339 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 WDR87Q6ZQQ6 2873 aa12.5□□□□□ -0.41
VPS4B-202ENST00000588059 CEP250Q9BV73 2442 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 hCG_1984214I3L0E3 225 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 NARSO43776 548 aaKnown RBP12.49□□□□□ -0.41
VPS4B-202ENST00000588059 ZNF862O60290 1169 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 N4BP1O75113 896 aaKnown RBP12.49□□□□□ -0.41
VPS4B-202ENST00000588059 LMNAP02545 664 aaKnown RBP12.49□□□□□ -0.41
VPS4B-202ENST00000588059 CYP3A4P08684 503 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 SETQ01105 290 aaPredicted RBP12.49□□□□□ -0.41
VPS4B-202ENST00000588059 JAKMIP3Q5VZ66 844 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 APOA5Q6Q788 366 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 DGLUCYQ7Z3D6 616 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 PPFIBP1Q86W92 1011 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 ZNF713Q8N859 430 aaPredicted RBP12.49□□□□□ -0.41
VPS4B-202ENST00000588059 KCNG4Q8TDN1 519 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 RSPH1Q8WYR4 309 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 LPPQ93052 612 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 SCLT1Q96NL6 688 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 GLT8D2Q9H1C3 349 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 SEMA4AQ9H3S1 761 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 NRDE2Q9H7Z3 1164 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 TBC1D22BQ9NU19 505 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 TBC1D13Q9NVG8 400 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 BARHL2Q9NY43 387 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 IGSF9Q9P2J2 1179 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 R4GN57 208 aa12.49□□□□□ -0.41
VPS4B-202ENST00000588059 NCOR2Q9Y618 2525 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 KRBA1A5PL33 1030 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 CARNS1A5YM72 827 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 SPDYE4A6NLX3 237 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 MEIS3P2A8K0S8 358 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 SLC27A2O14975 620 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 B4GALT3O60512 393 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 CSDE1O75534 798 aaKnown RBP12.48□□□□□ -0.41
VPS4B-202ENST00000588059 OATP04181 439 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 GALTP07902 379 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 PHKA2P46019 1235 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 CLCN4P51793 760 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 PRKCEQ02156 737 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 LETM2Q2VYF4 491 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 C15orf39Q6ZRI6 1047 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 KIAA2013Q8IYS2 634 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 NLRP7Q8WX94 980 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 KLHL5Q96PQ7 755 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 TRAIPQ9BWF2 469 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 RBM28Q9NW13 759 aaKnown RBP12.48□□□□□ -0.41
VPS4B-202ENST00000588059 WNT16Q9UBV4 365 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 DNAJB4Q9UDY4 337 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 TCEAL9Q9UHQ7 104 aa12.48□□□□□ -0.41
VPS4B-202ENST00000588059 V9GY48 417 aaPredicted RBP12.48□□□□□ -0.41
VPS4B-202ENST00000588059 ADAMTS3O15072 1205 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 CFHP08603 1231 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 CNPP09543 421 aaKnown RBP12.47□□□□□ -0.41
VPS4B-202ENST00000588059 SLC11A1P49279 550 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 DRP2Q13474 957 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 UGCGQ16739 394 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 RTN1Q16799 776 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 LONRF3Q496Y0 759 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 NOMO2Q5JPE7 1267 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 GLB1LQ6UWU2 654 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 RSAD2Q8WXG1 361 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 RIN2Q8WYP3 895 aaPredicted RBP12.47□□□□□ -0.41
VPS4B-202ENST00000588059 LSG1Q9H089 658 aaKnown RBP12.47□□□□□ -0.41
VPS4B-202ENST00000588059 CHST12Q9NRB3 414 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 INPP5FQ9Y2H2 1132 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 SAMM50Q9Y512 469 aa12.47□□□□□ -0.41
VPS4B-202ENST00000588059 CACNA1IQ9P0X4 2223 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 WDR64B1ANS9 1081 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 LILRB3O75022 631 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 KLRC2P26717 231 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 RNASELQ05823 741 aaKnown RBP12.46□□□□□ -0.41
VPS4B-202ENST00000588059 TBC1D8BQ0IIM8 1120 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 PUM1Q14671 1186 aaKnown RBP eCLIP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms