RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 ANAPC15P60006 121 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 KLF1Q13351 362 aaPredicted RBP6.5□□□□□ -1.37
NUP88-208ENST00000574087 ADAM15Q13444 863 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 NFYCQ13952 458 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 FBLN7Q53RD9 439 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 CCDC178Q5BJE1 867 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 LCE3BQ5TA77 95 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 SYDE2Q5VT97 1194 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 TTLL10Q6ZVT0 673 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 USP30Q70CQ3 517 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 GAB3Q8WWW8 586 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 WDR92Q96MX6 357 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 OSBPL6Q9BZF3 934 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 CCDC8Q9H0W5 538 aaPredicted RBP6.5□□□□□ -1.37
NUP88-208ENST00000574087 OR10A2Q9H208 303 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 ADAM7Q9H2U9 754 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 DNAI1Q9UI46 699 aa6.5□□□□□ -1.37
NUP88-208ENST00000574087 A0A0G2JLL6 359 aaPredicted RBP6.49□□□□□ -1.37
NUP88-208ENST00000574087 H2AFYO75367 372 aaKnown RBP6.49□□□□□ -1.37
NUP88-208ENST00000574087 SEC24DO94855 1032 aaPredicted RBP6.49□□□□□ -1.37
NUP88-208ENST00000574087 EPHB4P54760 987 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 PPP2CBP62714 309 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 PPP2CAP67775 309 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.49□□□□□ -1.37
NUP88-208ENST00000574087 RNF151Q2KHN1 245 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 KCNK18Q7Z418 384 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 FERMT3Q86UX7 667 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 OR14C36Q8NHC7 312 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 TGFBRAP1Q8WUH2 860 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 GFM2Q969S9 779 aaKnown RBP6.49□□□□□ -1.37
NUP88-208ENST00000574087 TEPSINQ96N21 525 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 KCTD10Q9H3F6 313 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 RAPGEFL1Q9UHV5 662 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 TRHDEQ9UKU6 1024 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 WASHC2AQ641Q2 1341 aa6.49□□□□□ -1.37
NUP88-208ENST00000574087 C2orf78A6NCI8 922 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 ARHGAP6O43182 974 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 PRICKLE3O43900 615 aaPredicted RBP6.48□□□□□ -1.37
NUP88-208ENST00000574087 LGALS4P56470 323 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 MRPS9P82933 396 aaKnown RBP6.48□□□□□ -1.37
NUP88-208ENST00000574087 HGFACQ04756 655 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 PPARAQ07869 468 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 ITKQ08881 620 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 SURF1Q15526 300 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 BRDTQ58F21 947 aaPredicted RBP6.48□□□□□ -1.37
NUP88-208ENST00000574087 ARHGEF18Q6ZSZ5 1173 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 GAREM2Q75VX8 874 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 CLEC14AQ86T13 490 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 STAG1Q8WVM7 1258 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 LPPQ93052 612 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 RAX2Q96IS3 184 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 C20orf173Q96LM9 149 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 FDXACB1Q9BRP7 624 aaPredicted RBP6.48□□□□□ -1.37
NUP88-208ENST00000574087 ASPSCR1Q9BZE9 553 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 CCM2LQ9NUG4 571 aaPredicted RBP6.48□□□□□ -1.37
NUP88-208ENST00000574087 TYW1Q9NV66 732 aaKnown RBP6.48□□□□□ -1.37
NUP88-208ENST00000574087 RTEL1Q9NZ71 1219 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 EVLQ9UI08 416 aaPredicted RBP6.48□□□□□ -1.37
NUP88-208ENST00000574087 EDARQ9UNE0 448 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 CDY2AQ9Y6F7 541 aa6.48□□□□□ -1.37
NUP88-208ENST00000574087 TRIM75PA6NK02 468 aa6.47□□□□□ -1.37
NUP88-208ENST00000574087 GABRDO14764 452 aa6.47□□□□□ -1.37
NUP88-208ENST00000574087 LAMTOR5O43504 91 aa6.47□□□□□ -1.37
NUP88-208ENST00000574087 HNRNPLP14866 589 aaKnown RBP eCLIP6.47□□□□□ -1.37
NUP88-208ENST00000574087 MAN2A1Q16706 1144 aa6.47□□□□□ -1.37
NUP88-208ENST00000574087 TBC1D10BQ4KMP7 808 aaPredicted RBP6.47□□□□□ -1.37
NUP88-208ENST00000574087 CFHR4Q92496 578 aa6.47□□□□□ -1.37
NUP88-208ENST00000574087 MTMR8Q96EF0 704 aa6.47□□□□□ -1.37
NUP88-208ENST00000574087 SEC61A2Q9H9S3 476 aa6.47□□□□□ -1.37
NUP88-208ENST00000574087 FAM184BQ9ULE4 1060 aa6.47□□□□□ -1.37
NUP88-208ENST00000574087 MATN2O00339 956 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 NRP2O60462 931 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 PLATP00750 562 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 GAAP10253 952 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 IARSP41252 1262 aaKnown RBP6.46□□□□□ -1.38
NUP88-208ENST00000574087 MTNR1BP49286 362 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 EXOSC10Q01780 885 aaKnown RBP6.46□□□□□ -1.38
NUP88-208ENST00000574087 CD69Q07108 199 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 ZNF568Q3ZCX4 644 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 UBXN11Q5T124 520 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 C1orf162Q8NEQ5 155 aaPredicted RBP6.46□□□□□ -1.38
NUP88-208ENST00000574087 SLC7A6OSQ96CW6 309 aaPredicted RBP6.46□□□□□ -1.38
NUP88-208ENST00000574087 PTPN18Q99952 460 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 QRSL1Q9H0R6 528 aaKnown RBP6.46□□□□□ -1.38
NUP88-208ENST00000574087 MEGF9Q9H1U4 602 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 DDX56Q9NY93 547 aaKnown RBP6.46□□□□□ -1.38
NUP88-208ENST00000574087 PPP4R1LQ9P1A2 415 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 NR2E1Q9Y466 385 aa6.46□□□□□ -1.38
NUP88-208ENST00000574087 FZD9O00144 591 aa6.45□□□□□ -1.38
NUP88-208ENST00000574087 FSBPO95073 299 aa6.45□□□□□ -1.38
NUP88-208ENST00000574087 LY86O95711 162 aa6.45□□□□□ -1.38
NUP88-208ENST00000574087 MTHFD2P13995 350 aa6.45□□□□□ -1.38
NUP88-208ENST00000574087 XPAP23025 273 aaPredicted RBP6.45□□□□□ -1.38
NUP88-208ENST00000574087 ADCY7P51828 1080 aa6.45□□□□□ -1.38
NUP88-208ENST00000574087 SRSF2Q01130 221 aaKnown RBP6.45□□□□□ -1.38
NUP88-208ENST00000574087 SPIDRQ14159 915 aa6.45□□□□□ -1.38
NUP88-208ENST00000574087 MUM1Q2TAK8 710 aa6.45□□□□□ -1.38
NUP88-208ENST00000574087 TOR2AQ5JU69 321 aa6.45□□□□□ -1.38
NUP88-208ENST00000574087 SLFN13Q68D06 897 aa6.45□□□□□ -1.38
NUP88-208ENST00000574087 UNC5BQ8IZJ1 945 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms