RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 MRPL17Q9NRX2 175 aaKnown RBP12.58□□□□□ -0.4
VPS53-207ENST00000570510 BAZ2BQ9UIF8 2168 aaKnown RBP12.58□□□□□ -0.4
VPS53-207ENST00000570510 RAB23Q9ULC3 237 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 INPP5FQ9Y2H2 1132 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 PCDHGA2Q9Y5H1 932 aa12.58□□□□□ -0.4
VPS53-207ENST00000570510 GPR32O75388 356 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 ADRB1P08588 477 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 GNAQP50148 359 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 CLCN4P51793 760 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 BBXQ8WY36 941 aaPredicted RBP12.57□□□□□ -0.4
VPS53-207ENST00000570510 PHKBQ93100 1093 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 KLHL5Q96PQ7 755 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 FAM193BQ96PV7 902 aaPredicted RBP12.57□□□□□ -0.4
VPS53-207ENST00000570510 FOXQ1Q9C009 403 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 WDR6Q9NNW5 1121 aaKnown RBP12.57□□□□□ -0.4
VPS53-207ENST00000570510 MAN1C1Q9NR34 630 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS53-207ENST00000570510 EPS15L1Q9UBC2 864 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 FBXO4Q9UKT5 387 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 CEP131Q9UPN4 1083 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 SMG5Q9UPR3 1016 aaKnown RBP12.57□□□□□ -0.4
VPS53-207ENST00000570510 SPTBN2O15020 2390 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 CLUHO75153 1309 aa12.57□□□□□ -0.4
VPS53-207ENST00000570510 OTOGLQ3ZCN5 2332 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 C2CD2LO14523 706 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 MAGEB2O15479 319 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 ATG7O95352 703 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 C22orf31O95567 290 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 CNPP09543 421 aaKnown RBP12.56□□□□□ -0.4
VPS53-207ENST00000570510 MYBP10242 640 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 CLCN3P51790 818 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 AK2P54819 239 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 UBXN2BQ14CS0 331 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 LONRF3Q496Y0 759 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 CEP55Q53EZ4 464 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 PPM1JQ5JR12 505 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 TWF2Q6IBS0 349 aaKnown RBP12.56□□□□□ -0.4
VPS53-207ENST00000570510 EFCAB12Q6NXP0 572 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 CYP26C1Q6V0L0 522 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 TMEM173Q86WV6 379 aaPredicted RBP12.56□□□□□ -0.4
VPS53-207ENST00000570510 FEZF2Q8TBJ5 459 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 NLRP7Q8WX94 980 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 SMG7Q92540 1137 aaKnown RBP12.56□□□□□ -0.4
VPS53-207ENST00000570510 ZNF668Q96K58 619 aaPredicted RBP12.56□□□□□ -0.4
VPS53-207ENST00000570510 OSBPL3Q9H4L5 887 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 DLGAP2Q9P1A6 1054 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 SSX2IPQ9Y2D8 614 aa12.56□□□□□ -0.4
VPS53-207ENST00000570510 U3KPZ7 1027 aaPredicted RBP12.56□□□□□ -0.4
VPS53-207ENST00000570510 POTEMA6NI47 508 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 INPPL1O15357 1258 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 N4BP1O75113 896 aaKnown RBP12.55□□□□□ -0.4
VPS53-207ENST00000570510 URODP06132 367 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 ADH1AP07327 375 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 GALTP07902 379 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 SKIP12755 728 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 SMARCA1P28370 1054 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 COL9A3Q14050 684 aaPredicted RBP12.55□□□□□ -0.4
VPS53-207ENST00000570510 COL9A2Q14055 689 aaPredicted RBP12.55□□□□□ -0.4
VPS53-207ENST00000570510 NOMO2Q5JPE7 1267 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 POTEGQ6S5H5 508 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 ABHD15Q6UXT9 468 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 NFXL1Q6ZNB6 911 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 GET4Q7L5D6 327 aaPredicted RBP12.55□□□□□ -0.4
VPS53-207ENST00000570510 HEATR3Q7Z4Q2 680 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 CCDC60Q8IWA6 550 aaPredicted RBP12.55□□□□□ -0.4
VPS53-207ENST00000570510 CMASQ8NFW8 434 aaPredicted RBP12.55□□□□□ -0.4
VPS53-207ENST00000570510 NCOA7Q8NI08 942 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 URGCPQ8TCY9 931 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 SENP2Q9HC62 589 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 AGO4Q9HCK5 861 aaKnown RBP12.55□□□□□ -0.4
VPS53-207ENST00000570510 ZSCAN32Q9NX65 697 aa12.55□□□□□ -0.4
VPS53-207ENST00000570510 IGKV6D-21A0A0A0MT36 114 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 KANSL1LA0AUZ9 987 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 TBC1D4O60343 1298 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 GLUD1P00367 558 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 ALDH2P05091 517 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 LAMP2P13473 410 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 FGFR4P22455 802 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 NUCB1Q02818 461 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 ITGB3BPQ13352 177 aaPredicted RBP12.54□□□□□ -0.4
VPS53-207ENST00000570510 SNW1Q13573 536 aaKnown RBP12.54□□□□□ -0.4
VPS53-207ENST00000570510 ZNF598Q86UK7 904 aaKnown RBP12.54□□□□□ -0.4
VPS53-207ENST00000570510 LRRC71Q8N4P6 559 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 CCDC82Q8N4S0 544 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 EXOC6Q8TAG9 804 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 MYADMQ96S97 322 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 MYL10Q9BUA6 226 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 LNPKQ9C0E8 428 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 NRDE2Q9H7Z3 1164 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 SLC2A4RGQ9NR83 387 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 TBC1D13Q9NVG8 400 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 SAMM50Q9Y512 469 aa12.54□□□□□ -0.4
VPS53-207ENST00000570510 FAM170BA6NMN3 283 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 ZBTB42B2RXF5 422 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 NCAM2O15394 837 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 LRRN2O75325 713 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 DDAH1O94760 285 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 CCNE2O96020 404 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 FOSP01100 380 aaPredicted RBP12.53□□□□□ -0.4
VPS53-207ENST00000570510 DARSP14868 501 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms