RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 LLPHQ9BRT6 129 aaKnown RBP13.51□□□□□ -0.25
VPS9D1-207ENST00000568691 FOXQ1Q9C009 403 aa13.51□□□□□ -0.25
VPS9D1-207ENST00000568691 UBIAD1Q9Y5Z9 338 aa13.51□□□□□ -0.25
VPS9D1-207ENST00000568691 IRAK3Q9Y616 596 aa13.51□□□□□ -0.25
VPS9D1-207ENST00000568691 ASPMQ8IZT6 3477 aa13.51□□□□□ -0.25
VPS9D1-207ENST00000568691 C2orf16Q68DN1 1984 aa13.51□□□□□ -0.25
VPS9D1-207ENST00000568691 ANKRD11Q6UB99 2663 aaPredicted RBP13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 PNMA6FA0A0J9YX94 578 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 STK25O00506 426 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 PFKFB2O60825 505 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 LARGE1O95461 756 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 KLRC1P26715 233 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 LIFRP42702 1097 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 METAP2P50579 478 aaKnown RBP eCLIP13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 ANTXR2P58335 489 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 CCDC178Q5BJE1 867 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 ZC3H14Q6PJT7 736 aaKnown RBP13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 CLEC17AQ6ZS10 378 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 CYB5R4Q7L1T6 521 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 ZNF598Q86UK7 904 aaKnown RBP13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 SGMS1Q86VZ5 419 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 VPS52Q8N1B4 723 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 LRRC43Q8N309 656 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 GIMAP8Q8ND71 665 aaPredicted RBP13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 BRF1Q92994 677 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 ACSF2Q96CM8 615 aaPredicted RBP13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 MYADMQ96S97 322 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 IGSF9Q9P2J2 1179 aa13.5□□□□□ -0.25
VPS9D1-207ENST00000568691 SH2B2O14492 632 aaPredicted RBP13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 B4GALT3O60512 393 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 GPR32O75388 356 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 CTSAP10619 480 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 PDCP20941 246 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 BCAR1P56945 870 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 COL9A3Q14050 684 aaPredicted RBP13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 GRM4Q14833 912 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 KIZQ2M2Z5 673 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 LETM2Q2VYF4 491 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 NLRX1Q86UT6 975 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 ECHDC2Q86YB7 292 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 ST13P5Q8NFI4 369 aaPredicted RBP13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 TCEANC2Q96MN5 208 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 OSMRQ99650 979 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 SMC3Q9UQE7 1217 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 SIT1Q9Y3P8 196 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 KIF3AQ9Y496 699 aa13.49□□□□□ -0.25
VPS9D1-207ENST00000568691 CEP295Q9C0D2 2601 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 PIK3CDO00329 1044 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 KINO60870 393 aaKnown RBP13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 SRFP11831 508 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 PTMSP20962 102 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 HMGN5P82970 282 aaKnown RBP13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 ST3GAL1Q11201 340 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 PLPPR4Q7Z2D5 763 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 CABP7Q86V35 215 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 CCDC83Q8IWF9 413 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 TMTC2Q8N394 836 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 PJA1Q8NG27 643 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 NELL1Q92832 810 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 GBP4Q96PP9 640 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 RTKNQ9BST9 563 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 SFXN1Q9H9B4 322 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 EPS15L1Q9UBC2 864 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 DOCK8Q8NF50 2099 aa13.48□□□□□ -0.25
VPS9D1-207ENST00000568691 IGKV6D-21A0A0A0MT36 114 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 GPR182O15218 404 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 LILRB3O75022 631 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 LILRB5O75023 590 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 ATP4AP20648 1035 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 CA8P35219 290 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 CLCN4P51793 760 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 CRYBB1P53674 252 aaPredicted RBP13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 ACTR2P61160 394 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 PTPN14Q15678 1187 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 IFIT1BQ5T764 474 aaKnown RBP13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 FAM43BQ6ZT52 329 aaPredicted RBP13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 ZBTB44Q8NCP5 570 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 HELQQ8TDG4 1101 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 PIBF1Q8WXW3 757 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 ARHGEF3Q9NR81 526 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 FOXD4L1Q9NU39 408 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 NCDNQ9UBB6 729 aa13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 CDV3Q9UKY7 258 aaKnown RBP13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 MTF2Q9Y483 593 aaPredicted RBP13.47□□□□□ -0.25
VPS9D1-207ENST00000568691 ERICH2A1L162 156 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 DDX11L8A8MPP1 907 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 PRR5-ARHGAP8B1AHC4 643 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 ATG7O95352 703 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 VTNP04004 478 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 SDHBP21912 280 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 STAT5BP51692 787 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 ARHGAP8P85298 464 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 LMNB2Q03252 620 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 ITGB3BPQ13352 177 aaPredicted RBP13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 MTMR1Q13613 665 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 ZNF528Q3MIS6 628 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 PPM1JQ5JR12 505 aa13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 DDX53Q86TM3 631 aaKnown RBP13.46□□□□□ -0.25
VPS9D1-207ENST00000568691 SMARCC2Q8TAQ2 1214 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms