RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ASMTLO95671 621 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 AMY2AP04746 511 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 MYBL2P10244 700 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 ZNF28P17035 718 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 SYN1P17600 705 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 AMY2BP19961 511 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 PRPHP41219 470 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 MAGEA9P43362 315 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 MLLT6P55198 1093 aaPredicted RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 GRIK3Q13003 919 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 DDX10Q13206 875 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 TMED1Q13445 227 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 PDIA5Q14554 519 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 RBBP5Q15291 538 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 SKOR2Q2VWA4 1001 aaPredicted RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 TBC1D25Q3MII6 688 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 TBC1D10BQ4KMP7 808 aaPredicted RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 FIGNQ5HY92 759 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 FAM26FQ5R3K3 315 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 LCE4AQ5TA78 99 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 CPZQ66K79 652 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 BORAQ6PGQ7 559 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 SYT10Q6XYQ8 523 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 FGD2Q7Z6J4 655 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 ANKRD13BQ86YJ7 626 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 TEX11Q8IYF3 940 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 C10orf67Q8IYJ2 551 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 RPUSD2Q8IZ73 545 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 STPG3Q8N7X2 389 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 IGSF22Q8N9C0 903 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 GSTCDQ8NEC7 633 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 TDRD7Q8NHU6 1098 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 THOC1Q96FV9 657 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 LCORQ96JN0 433 aaPredicted RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 TEPSINQ96N21 525 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 PLEKHG4BQ96PX9 1271 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 CRACR2AQ9BSW2 395 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 BDH2Q9BUT1 245 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 MRPL4Q9BYD3 311 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 PIF1Q9H611 641 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 RETREG1Q9H6L5 497 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 KANSL2Q9H9L4 492 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 METTL14Q9HCE5 456 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 A1CFQ9NQ94 594 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 TRPV5Q9NQA5 729 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 DIAPH3Q9NSV4 1193 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 SPATS2LQ9NUQ6 558 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 GNL3LQ9NVN8 582 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 RTEL1Q9NZ71 1219 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 CPSF2Q9P2I0 782 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 THRAP3Q9Y2W1 955 aaKnown RBP3.73□□□□□ -1.81
VPS35-208ENST00000568612 ZDHHC9Q9Y397 364 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 ZMYM3Q14202 1370 aa3.73□□□□□ -1.81
VPS35-208ENST00000568612 ZNF536O15090 1300 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 CNTLNQ9NXG0 1405 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 TCRBV16S1A1N1A0A5B0 115 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 ANKRD62A6NC57 917 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 FAM90A27PA6NNH2 459 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 ZNF839A8K0R7 811 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 B8ZZF3 427 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 ZNF561-AS1K7EIQ3 104 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 WNT9AO14904 365 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 PLD2O14939 933 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 ZSCAN9O15535 394 aaPredicted RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 HTATSF1O43719 755 aaKnown RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 PRICKLE3O43900 615 aaPredicted RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 FOXD2O60548 495 aaPredicted RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 HMMRO75330 724 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 TPPPO94811 219 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 VCAM1P19320 739 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 CHMLP26374 656 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 RDXP35241 583 aaKnown RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 USP8P40818 1118 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 EPHA5P54756 1037 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 RBM6P78332 1123 aaKnown RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 PLP2Q04941 152 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 NCBP1Q09161 790 aaKnown RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 SQSTM1Q13501 440 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 PRPF4BQ13523 1007 aaKnown RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 RTP5Q14D33 572 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 CCDC178Q5BJE1 867 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 TRIM61Q5EBN2 209 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 PRR31Q5SQ13 230 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 GAS2L3Q86XJ1 694 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 PROSER1Q86XN7 944 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 MYLK4Q86YV6 388 aaPredicted RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 AMOTL1Q8IY63 956 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 ELOA2Q8IYF1 753 aaPredicted RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 C2orf69Q8N8R5 385 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 DTX3Q8N9I9 347 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 KIF18AQ8NI77 898 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 WDR48Q8TAF3 677 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 DNAAF4Q8WXU2 420 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 PIBF1Q8WXW3 757 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 PPM1EQ8WY54 764 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 ZCCHC14Q8WYQ9 949 aaKnown RBP3.72□□□□□ -1.81
VPS35-208ENST00000568612 MIEF2Q96C03 454 aa3.72□□□□□ -1.81
VPS35-208ENST00000568612 KIF1BPQ96EK5 621 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms