RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 PPP1R16BQ96T49 567 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 CDCA3Q99618 268 aaPredicted RBP15.72■□□□□ 0.11
LDLR-213ENST00000560502 ZNF577Q9BSK1 485 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 RNF19AQ9NV58 838 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 TYW1Q9NV66 732 aaKnown RBP15.72■□□□□ 0.11
LDLR-213ENST00000560502 LZTS1Q9Y250 596 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 CACNA1HO95180 2353 aa15.72■□□□□ 0.11
LDLR-213ENST00000560502 PER2O15055 1255 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 VTNP04004 478 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 ATF7P17544 494 aaPredicted RBP15.71■□□□□ 0.11
LDLR-213ENST00000560502 LAG3P18627 525 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 CIITAP33076 1130 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 GNL2Q13823 731 aaKnown RBP15.71■□□□□ 0.11
LDLR-213ENST00000560502 PKN1Q16512 942 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 SPOUT1Q5T280 376 aaKnown RBP15.71■□□□□ 0.11
LDLR-213ENST00000560502 MCTP2Q6DN12 878 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 PDE12Q6L8Q7 609 aaKnown RBP15.71■□□□□ 0.11
LDLR-213ENST00000560502 TMEM184AQ6ZMB5 413 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 TRIM67Q6ZTA4 783 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 CCDC148Q8NFR7 591 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 CCDC12Q8WUD4 166 aaPredicted RBP15.71■□□□□ 0.11
LDLR-213ENST00000560502 LENG9Q96B70 501 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 PHF7Q9BWX1 381 aaPredicted RBP15.71■□□□□ 0.11
LDLR-213ENST00000560502 ATP6V0A4Q9HBG4 840 aa15.71■□□□□ 0.11
LDLR-213ENST00000560502 WDFY4Q6ZS81 3184 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 TMEM221A6NGB7 291 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 M0R296 226 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 DTNBO60941 627 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 YEATS4O95619 227 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 PSAPP07602 524 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 CLCN3P51790 818 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 ZXDAP98168 799 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 PLCB3Q01970 1234 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 GUCY1B3Q02153 619 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 LRRC55Q6ZSA7 311 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 CKAP2LQ8IYA6 745 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 THNSL1Q8IYQ7 743 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 REXO1Q8N1G1 1221 aaKnown RBP15.7■□□□□ 0.1
LDLR-213ENST00000560502 RASGRP4Q8TDF6 673 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 MICAL1Q8TDZ2 1067 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 SYAP1Q96A49 352 aaPredicted RBP15.7■□□□□ 0.1
LDLR-213ENST00000560502 SPATA32Q96LK8 384 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 AIFM3Q96NN9 605 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 CASD1Q96PB1 797 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 PHF20Q9BVI0 1012 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 TMEM117Q9H0C3 514 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 ADAMTS10Q9H324 1103 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 GABBR1Q9UBS5 961 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 CEP131Q9UPN4 1083 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 PCDHA10Q9Y5I2 948 aa15.7■□□□□ 0.1
LDLR-213ENST00000560502 MAGEB2O15479 319 aa15.69■□□□□ 0.1
LDLR-213ENST00000560502 EDIL3O43854 480 aa15.69■□□□□ 0.1
LDLR-213ENST00000560502 FOSBP53539 338 aa15.69■□□□□ 0.1
LDLR-213ENST00000560502 PRR16Q569H4 304 aa15.69■□□□□ 0.1
LDLR-213ENST00000560502 NOSTRINQ8IVI9 506 aa15.69■□□□□ 0.1
LDLR-213ENST00000560502 METTL13Q8N6R0 699 aa15.69■□□□□ 0.1
LDLR-213ENST00000560502 MRPS27Q92552 414 aaKnown RBP15.69■□□□□ 0.1
LDLR-213ENST00000560502 FAM167AQ96KS9 214 aa15.69■□□□□ 0.1
LDLR-213ENST00000560502 S1PR5Q9H228 398 aa15.69■□□□□ 0.1
LDLR-213ENST00000560502 C6orf50Q9HD87 102 aa15.69■□□□□ 0.1
LDLR-213ENST00000560502 HOXA2O43364 376 aa15.68■□□□□ 0.1
LDLR-213ENST00000560502 ZNF862O60290 1169 aa15.68■□□□□ 0.1
LDLR-213ENST00000560502 KRT2P35908 639 aa15.68■□□□□ 0.1
LDLR-213ENST00000560502 NLRP11P59045 1033 aaKnown RBP15.68■□□□□ 0.1
LDLR-213ENST00000560502 DIS3L2Q8IYB7 885 aaKnown RBP15.68■□□□□ 0.1
LDLR-213ENST00000560502 LRRC43Q8N309 656 aa15.68■□□□□ 0.1
LDLR-213ENST00000560502 PRSS33Q8NF86 280 aa15.68■□□□□ 0.1
LDLR-213ENST00000560502 KCNG4Q8TDN1 519 aa15.68■□□□□ 0.1
LDLR-213ENST00000560502 LEO1Q8WVC0 666 aaPredicted RBP15.68■□□□□ 0.1
LDLR-213ENST00000560502 RCOR1Q9UKL0 485 aa15.68■□□□□ 0.1
LDLR-213ENST00000560502 MORC2Q9Y6X9 1032 aaPredicted RBP15.68■□□□□ 0.1
LDLR-213ENST00000560502 TCHHQ07283 1943 aa15.68■□□□□ 0.1
LDLR-213ENST00000560502 WDR64B1ANS9 1081 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 OATP04181 439 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 EIF4BP23588 611 aaKnown RBP15.67■□□□□ 0.1
LDLR-213ENST00000560502 GNA11P29992 359 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 NASPP49321 788 aaPredicted RBP15.67■□□□□ 0.1
LDLR-213ENST00000560502 FOXD4L6Q3SYB3 417 aaPredicted RBP15.67■□□□□ 0.1
LDLR-213ENST00000560502 RILPL1Q5EBL4 403 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 CLLU1OSQ5K130 101 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 PLPP4Q5VZY2 271 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 EFCAB12Q6NXP0 572 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 ANKRD54Q6NXT1 300 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 SYCE2Q6PIF2 218 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 KCNT2Q6UVM3 1135 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 FOXD4L3Q6VB84 417 aaPredicted RBP15.67■□□□□ 0.1
LDLR-213ENST00000560502 ECHDC2Q86YB7 292 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 ZNF710Q8N1W2 664 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 LRRC71Q8N4P6 559 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 DAGLBQ8NCG7 672 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 PBXIP1Q96AQ6 731 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 RPGRIP1Q96KN7 1286 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 MAP7D2Q96T17 732 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 TCF25Q9BQ70 676 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 TCEAL9Q9UHQ7 104 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 AKT3Q9Y243 479 aa15.67■□□□□ 0.1
LDLR-213ENST00000560502 HIDE1A8MVS5 230 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 MSH4O15457 936 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 SRGAP2BP0DMP2 458 aa15.66■□□□□ 0.1
LDLR-213ENST00000560502 PPM1AP35813 382 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms