RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	ANTXR2	P58335	489 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	TIGD2	Q4W5G0	525 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	NBPF6	Q5VWK0	638 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	FOXB2	Q5VYV0	432 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	KRT40	Q6A162	431 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	SPATC1	Q76KD6	591 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	CPT1C	Q8TCG5	803 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	ST8SIA2	Q92186	375 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	ERCC4	Q92889	916 aa	Predicted RBP	4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	E2F7	Q96AV8	911 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	ARL8A	Q96BM9	186 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	C16orf92	Q96LL3	132 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	NBPF4	Q96M43	638 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	CYP4F11	Q9HBI6	524 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	SORCS3	Q9UPU3	1222 aa		4.55	□□□□□ -1.68
SPG11-222	ENST00000560435	ZBTB7C	A1YPR0	619 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	RECQL4	O94761	1208 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	PRL	P01236	227 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	ZFP36	P26651	326 aa	Known RBP	4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	KRTAP10-9	P60411	292 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	ROM1	Q03395	351 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	SPIDR	Q14159	915 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435		Q6YL49	198 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	OVCH1	Q7RTY7	1134 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	CXorf67	Q86X51	503 aa	Predicted RBP	4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	EXOC2	Q96KP1	924 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	WDR92	Q96MX6	357 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	POLR3B	Q9NW08	1133 aa	Predicted RBP	4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	COQ6	Q9Y2Z9	468 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	MSRB2	Q9Y3D2	182 aa		4.54	□□□□□ -1.68
SPG11-222	ENST00000560435	ERBB2	P04626	1255 aa		4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	GYPE	P15421	78 aa		4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	ITGB6	P18564	788 aa		4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	LAG3	P18627	525 aa		4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	GNAT2	P19087	354 aa		4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	FNTB	P49356	437 aa		4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	CC2D1A	Q6P1N0	951 aa	Predicted RBP	4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	RD3	Q7Z3Z2	195 aa		4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	CMTM4	Q8IZR5	234 aa		4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	C14orf93	Q9H972	538 aa	Known RBP	4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	KCMF1	Q9P0J7	381 aa		4.53	□□□□□ -1.68
SPG11-222	ENST00000560435	CENPVL1	A0A0U1RR11	272 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	MTSS1	O43312	755 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	SCAF4	O95104	1147 aa	Known RBP	4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	APP	P05067	770 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	RGS3	P49796	1198 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	NPEPPS	P55786	919 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	IRF9	Q00978	393 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	SLC6A3	Q01959	620 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	PAPD7	Q5XG87	772 aa	Known RBP	4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	BMP8A	Q7Z5Y6	402 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	MYEOV	Q96EZ4	313 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	DYDC2	Q96IM9	177 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	GML	Q99445	158 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	DHRS4	Q9BTZ2	278 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	SLC46A2	Q9BY10	475 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	HAPLN2	Q9GZV7	340 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	R3HDML	Q9H3Y0	253 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	PRDM13	Q9H4Q3	707 aa		4.52	□□□□□ -1.69
SPG11-222	ENST00000560435	PDPK1	O15530	556 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	DAPK3	O43293	454 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	EFCAB14	O75071	495 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	NPTXR	O95502	500 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	HK1	P19367	917 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	ZEB1	P37275	1124 aa	Predicted RBP	4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	USP14	P54578	494 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	SSRP1	Q08945	709 aa	Known RBP	4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	RASGRF1	Q13972	1273 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	MTERF2	Q49AM1	385 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	SLFN12L	Q6IEE8	588 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	GSTCD	Q8NEC7	633 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	SUPT20H	Q8NEM7	779 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	MAML3	Q96JK9	1138 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	FAM193B	Q96PV7	902 aa	Predicted RBP	4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	TRIM55	Q9BYV6	548 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	KCNH6	Q9H252	994 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	SLC52A2	Q9HAB3	445 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	NCDN	Q9UBB6	729 aa		4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	MRPS23	Q9Y3D9	190 aa	Known RBP	4.51	□□□□□ -1.69
SPG11-222	ENST00000560435	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	STC2	O76061	302 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	ZBTB48	P10074	688 aa	Predicted RBP	4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	KIR2DL3	P43628	341 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	LONRF2	Q1L5Z9	754 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	METTL24	Q5JXM2	366 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	OTOP1	Q7RTM1	612 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	BHLHA9	Q7RTU4	235 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	C2orf69	Q8N8R5	385 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	SLC43A3	Q8NBI5	491 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	SLC7A14	Q8TBB6	771 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	BOC	Q9BWV1	1114 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	SERHL2	Q9H4I8	314 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	ZNF768	Q9H5H4	540 aa	Known RBP	4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	NDOR1	Q9UHB4	597 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	SFMBT1	Q9UHJ3	866 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	PFDN2	Q9UHV9	154 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	DNAI1	Q9UI46	699 aa		4.5	□□□□□ -1.69
SPG11-222	ENST00000560435	UBA6	A0AVT1	1052 aa	Predicted RBP	4.49	□□□□□ -1.69

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