RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KIAA1958Q8N8K9 716 aa6.89□□□□□ -1.31
VPS13C-208ENST00000559119 ARL8AQ96BM9 186 aa6.89□□□□□ -1.31
VPS13C-208ENST00000559119 DNAI1Q9UI46 699 aa6.89□□□□□ -1.31
VPS13C-208ENST00000559119 SYNPO2Q9UMS6 1093 aa6.89□□□□□ -1.31
VPS13C-208ENST00000559119 RPS6KA4O75676 772 aa6.88□□□□□ -1.31
VPS13C-208ENST00000559119 TOX4O94842 621 aa6.88□□□□□ -1.31
VPS13C-208ENST00000559119 VSIG10L2P0DP72 767 aa6.88□□□□□ -1.31
VPS13C-208ENST00000559119 BCAR1P56945 870 aa6.88□□□□□ -1.31
VPS13C-208ENST00000559119 MFSD5Q6N075 450 aa6.88□□□□□ -1.31
VPS13C-208ENST00000559119 BMP8AQ7Z5Y6 402 aa6.88□□□□□ -1.31
VPS13C-208ENST00000559119 CLEC14AQ86T13 490 aa6.88□□□□□ -1.31
VPS13C-208ENST00000559119 ULK2Q8IYT8 1036 aa6.88□□□□□ -1.31
VPS13C-208ENST00000559119 NCDNQ9UBB6 729 aa6.88□□□□□ -1.31
VPS13C-208ENST00000559119 MAFGO15525 162 aa6.87□□□□□ -1.31
VPS13C-208ENST00000559119 MFAP3LO75121 409 aa6.87□□□□□ -1.31
VPS13C-208ENST00000559119 JUNP05412 331 aaKnown RBP6.87□□□□□ -1.31
VPS13C-208ENST00000559119 SLC25A3Q00325 362 aa6.87□□□□□ -1.31
VPS13C-208ENST00000559119 EPHA7Q15375 998 aa6.87□□□□□ -1.31
VPS13C-208ENST00000559119 ZG16BQ96DA0 208 aa6.87□□□□□ -1.31
VPS13C-208ENST00000559119 C16orf92Q96LL3 132 aa6.87□□□□□ -1.31
VPS13C-208ENST00000559119 CLUHP3Q96NS8 147 aa6.87□□□□□ -1.31
VPS13C-208ENST00000559119 TTPALQ9BTX7 342 aa6.87□□□□□ -1.31
VPS13C-208ENST00000559119 NRDE2Q9H7Z3 1164 aa6.87□□□□□ -1.31
VPS13C-208ENST00000559119 TNPO3Q9Y5L0 923 aaKnown RBP6.87□□□□□ -1.31
VPS13C-208ENST00000559119 XDHP47989 1333 aa6.86□□□□□ -1.31
VPS13C-208ENST00000559119 TRAF5O00463 557 aa6.86□□□□□ -1.31
VPS13C-208ENST00000559119 PPFIA2O75334 1257 aa6.86□□□□□ -1.31
VPS13C-208ENST00000559119 PTX3P26022 381 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-208ENST00000559119 PTGS2P35354 604 aa6.86□□□□□ -1.31
VPS13C-208ENST00000559119 FLT3P36888 993 aa6.86□□□□□ -1.31
VPS13C-208ENST00000559119 NANOS3P60323 173 aaKnown RBP6.86□□□□□ -1.31
VPS13C-208ENST00000559119 ADCY1Q08828 1119 aa6.86□□□□□ -1.31
VPS13C-208ENST00000559119 TOB2Q14106 344 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-208ENST00000559119 SF3A1Q15459 793 aaKnown RBP6.86□□□□□ -1.31
VPS13C-208ENST00000559119 PIK3R6Q5UE93 754 aa6.86□□□□□ -1.31
VPS13C-208ENST00000559119 TIGD7Q6NT04 549 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-208ENST00000559119 UBE2R2Q712K3 238 aaPredicted RBP6.86□□□□□ -1.31
VPS13C-208ENST00000559119 DNAJC10Q8IXB1 793 aa6.86□□□□□ -1.31
VPS13C-208ENST00000559119 ATXN2LQ8WWM7 1075 aaKnown RBP6.86□□□□□ -1.31
VPS13C-208ENST00000559119 C14orf93Q9H972 538 aaKnown RBP6.86□□□□□ -1.31
VPS13C-208ENST00000559119 DMRT1Q9Y5R6 373 aa6.86□□□□□ -1.31
VPS13C-208ENST00000559119 TMEM191CA6NGB0 347 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 GOLGA6L6A8MZA4 724 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 FAM20BO75063 409 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 DNAJC8O75937 253 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-208ENST00000559119 IPO13O94829 963 aaKnown RBP6.85□□□□□ -1.31
VPS13C-208ENST00000559119 HNRNPLP14866 589 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS13C-208ENST00000559119 ADCY2Q08462 1091 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 ZNF460Q14592 562 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 MYBPC3Q14896 1274 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 ELOA2Q8IYF1 753 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-208ENST00000559119 C7orf31Q8N865 590 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 MB21D1Q8N884 522 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 HAS1Q92839 578 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 PGBD4Q96DM1 585 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 ZNF512Q96ME7 567 aaPredicted RBP6.85□□□□□ -1.31
VPS13C-208ENST00000559119 GPRC5BQ9NZH0 403 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 B4GALT6Q9UBX8 382 aa6.85□□□□□ -1.31
VPS13C-208ENST00000559119 APOL3O95236 402 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 SLC9A1P19634 815 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 RABGGTBP53611 331 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 NPEPPSP55786 919 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 KRTAP15-1Q3LI76 137 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 PHYKPLQ8IUZ5 450 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 CMTM4Q8IZR5 234 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 SLC25A43Q8WUT9 341 aaPredicted RBP6.84□□□□□ -1.31
VPS13C-208ENST00000559119 AGAP2Q99490 1192 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 MNTQ99583 582 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 OSBPL2Q9H1P3 480 aa6.84□□□□□ -1.31
VPS13C-208ENST00000559119 JMJD7P0C870 316 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 KIR2DL3P43628 341 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 FSTL1Q12841 308 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 NFE2L2Q16236 605 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 MAN2A1Q16706 1144 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 RABL3Q5HYI8 236 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 LAIR1Q6GTX8 287 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 ZNF575Q86XF7 245 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 CRAMP1Q96RY5 1269 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 HAPLN2Q9GZV7 340 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 MTG2Q9H4K7 406 aa6.83□□□□□ -1.32
VPS13C-208ENST00000559119 KLRG2A4D1S0 409 aaPredicted RBP6.82□□□□□ -1.32
VPS13C-208ENST00000559119 CBX4O00257 560 aa6.82□□□□□ -1.32
VPS13C-208ENST00000559119 FOXN1O15353 648 aa6.82□□□□□ -1.32
VPS13C-208ENST00000559119 GNAT2P19087 354 aa6.82□□□□□ -1.32
VPS13C-208ENST00000559119 SPIDRQ14159 915 aa6.82□□□□□ -1.32
VPS13C-208ENST00000559119 SYNE4Q8N205 404 aa6.82□□□□□ -1.32
VPS13C-208ENST00000559119 ZNF276Q8N554 614 aa6.82□□□□□ -1.32
VPS13C-208ENST00000559119 MDGA1Q8NFP4 955 aa6.82□□□□□ -1.32
VPS13C-208ENST00000559119 UIMC1Q96RL1 719 aa6.82□□□□□ -1.32
VPS13C-208ENST00000559119 DNAJC2Q99543 621 aaKnown RBP6.82□□□□□ -1.32
VPS13C-208ENST00000559119 ELF4Q99607 663 aaPredicted RBP6.82□□□□□ -1.32
VPS13C-208ENST00000559119 PITHD1Q9GZP4 211 aaPredicted RBP6.82□□□□□ -1.32
VPS13C-208ENST00000559119 TOMM22Q9NS69 142 aa6.82□□□□□ -1.32
VPS13C-208ENST00000559119 CDK11AQ9UQ88 783 aaPredicted RBP6.82□□□□□ -1.32
VPS13C-208ENST00000559119 A0A0A6YYJ9 748 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 PRPF6O94906 941 aaKnown RBP6.81□□□□□ -1.32
VPS13C-208ENST00000559119 FSBPO95073 299 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 KRT4P19013 534 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 CFAP100Q494V2 611 aa6.81□□□□□ -1.32
VPS13C-208ENST00000559119 CDCA2Q69YH5 1023 aaPredicted RBP6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms