RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ASH2LQ9UBL3 628 aa2.17□□□□□ -2.06
USP3-209ENST00000558925 DDX20Q9UHI6 824 aaKnown RBP2.17□□□□□ -2.06
USP3-209ENST00000558925 MSRAQ9UJ68 235 aa2.17□□□□□ -2.06
USP3-209ENST00000558925 NOC2LQ9Y3T9 749 aaKnown RBP2.17□□□□□ -2.06
USP3-209ENST00000558925 PCDHB4Q9Y5E5 795 aa2.17□□□□□ -2.06
USP3-209ENST00000558925 PPP2R3BQ9Y5P8 575 aa2.17□□□□□ -2.06
USP3-209ENST00000558925 A0A1W2PQJ5 194 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 E2F8A0AVK6 867 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 PRSS38A1L453 326 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 MROH6A6NGR9 719 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 PATE3B3GLJ2 98 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 LAMTOR5O43504 91 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 NARSO43776 548 aaKnown RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 RFPL1O75677 317 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 C8BP07358 591 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 C5AR1P21730 350 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 LPOP22079 712 aaPredicted RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 CCND1P24385 295 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 RPL13P26373 211 aaKnown RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 STAT5AP42229 794 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 RECQLP46063 649 aaPredicted RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 SLC6A11P48066 632 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 EPHA5P54756 1037 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 MANFP55145 182 aaKnown RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 RHBDL3P58872 404 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 CCT2P78371 535 aaKnown RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 GALEQ14376 348 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 ZNF267Q14586 743 aaPredicted RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 GRM3Q14832 879 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 ACAP2Q15057 778 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 PAN2Q504Q3 1202 aaKnown RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 PRR31Q5SQ13 230 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 TMEM240Q5SV17 173 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 SYCP2LQ5T4T6 812 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 PHF19Q5T6S3 580 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 GPR158Q5T848 1215 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 NXNQ6DKJ4 435 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 CC2D1AQ6P1N0 951 aaPredicted RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 CCDC62Q6P9F0 684 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 SLC4A10Q6U841 1118 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 UNQ6494/PRO21346Q6UXR6 183 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 EP400NLQ6ZTU2 488 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 EPM2AIP1Q7L775 607 aaPredicted RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 MILR1Q7Z6M3 343 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 CATIPQ7Z7H3 387 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 CXorf67Q86X51 503 aaPredicted RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 DCP2Q8IU60 420 aaKnown RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 FAM26EQ8N5C1 309 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 TXNDC5Q8NBS9 432 aaKnown RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 NETO2Q8NC67 525 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 ASB15Q8WXK1 588 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 JADE3Q92613 823 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 PMM1Q92871 262 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 VOPP1Q96AW1 172 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 EAF2Q96CJ1 260 aaPredicted RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 FOXRED1Q96CU9 486 aaPredicted RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 MBD6Q96DN6 1003 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 CCDC136Q96JN2 1154 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 GBP4Q96PP9 640 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 CDK5RAP1Q96SZ6 601 aaKnown RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 MYL10Q9BUA6 226 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 ZNF341Q9BYN7 854 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 SLC13A1Q9BZW2 595 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 SMOC1Q9H4F8 434 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 ACSS2Q9NR19 701 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 OBP2AQ9NY56 170 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 SERPINB13Q9UIV8 391 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 TUBD1Q9UJT1 453 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 WASF3Q9UPY6 502 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 ZNF652Q9Y2D9 606 aa2.16□□□□□ -2.06
USP3-209ENST00000558925 ARID4BQ4LE39 1312 aaPredicted RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 WDR33Q9C0J8 1336 aaKnown RBP2.16□□□□□ -2.06
USP3-209ENST00000558925 PRAMEF22A3QJZ6 481 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 TRIM75PA6NK02 468 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 A6NNZ2 444 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 KIF3BO15066 747 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 MUSKO15146 869 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 PRPF6O94906 941 aaKnown RBP2.15□□□□□ -2.07
USP3-209ENST00000558925 APOL3O95236 402 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 IL33O95760 270 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 MPIG6BO95866 241 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 PRLP01236 227 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 CYP17A1P05093 508 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 FAHP16930 419 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 AGXTP21549 392 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 ENPP1P22413 925 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 LMO1P25800 156 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 CD40P25942 277 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 AOAHP28039 575 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 SDHAP31040 664 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 GJA4P35212 333 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 MTNR1BP49286 362 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 RGS3P49796 1198 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 SELENOPP49908 381 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 CDK17Q00537 523 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 CACNB2Q08289 660 aaPredicted RBP2.15□□□□□ -2.07
USP3-209ENST00000558925 KIAA2012Q0VF49 1180 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 FOXE3Q13461 319 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 MOGSQ13724 837 aa2.15□□□□□ -2.07
USP3-209ENST00000558925 TRIM25Q14258 630 aaKnown RBP2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms