RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 PPP4R3AQ6IN85 833 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 TMEM173Q86WV6 379 aaPredicted RBP12.25□□□□□ -0.45
SYNE2-227ENST00000557307 RHPN2Q8IUC4 686 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 FEZF2Q8TBJ5 459 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 BCL7CQ8WUZ0 217 aaPredicted RBP12.25□□□□□ -0.45
SYNE2-227ENST00000557307 TMEM143Q96AN5 459 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 SCLT1Q96NL6 688 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 LXNQ9BS40 222 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 TMEM117Q9H0C3 514 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 ELAC1Q9H777 363 aaKnown RBP12.25□□□□□ -0.45
SYNE2-227ENST00000557307 CYP26B1Q9NR63 512 aa12.25□□□□□ -0.45
SYNE2-227ENST00000557307 C19orf67A6NJJ6 358 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 HIDE1A8MVS5 230 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 BTBD18B2RXH4 712 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 PI4K2BG5E9Z4 385 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 TMOD1P28289 359 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 KRT2P35908 639 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 QARSP47897 775 aaKnown RBP12.24□□□□□ -0.45
SYNE2-227ENST00000557307 NDUFV1P49821 464 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 AFF1P51825 1210 aaKnown RBP12.24□□□□□ -0.45
SYNE2-227ENST00000557307 GUCY1B3Q02153 619 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 SMAD2Q15796 467 aaKnown RBP12.24□□□□□ -0.45
SYNE2-227ENST00000557307 NAALADL2Q58DX5 795 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 THNSL1Q8IYQ7 743 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 KMT2EQ8IZD2 1858 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 EFHBQ8N7U6 833 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 NLRP4Q96MN2 994 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 IFT122Q9HBG6 1241 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 XPNPEP1Q9NQW7 623 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 TLR9Q9NR96 1032 aa12.24□□□□□ -0.45
SYNE2-227ENST00000557307 SUCLA2Q9P2R7 463 aaPredicted RBP12.24□□□□□ -0.45
SYNE2-227ENST00000557307 A0A0U1RQF3 1178 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 PHKA2P46019 1235 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 NEK4P51957 841 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 ODR4Q5SWX8 454 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 KCNT2Q6UVM3 1135 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 DIS3L2Q8IYB7 885 aaKnown RBP12.23□□□□□ -0.45
SYNE2-227ENST00000557307 FAM177A1Q8N128 213 aaPredicted RBP12.23□□□□□ -0.45
SYNE2-227ENST00000557307 LRRC43Q8N309 656 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 FAM20AQ96MK3 541 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 KIF2CQ99661 725 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 TMEM60Q9H2L4 133 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 DHX33Q9H6R0 707 aaKnown RBP12.23□□□□□ -0.45
SYNE2-227ENST00000557307 CD207Q9UJ71 328 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 PIN4Q9Y237 131 aaKnown RBP12.23□□□□□ -0.45
SYNE2-227ENST00000557307 PCDHB12Q9Y5F1 795 aa12.23□□□□□ -0.45
SYNE2-227ENST00000557307 SLITRK3O94933 977 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 P4HBP07237 508 aaKnown RBP12.22□□□□□ -0.45
SYNE2-227ENST00000557307 GCFC2P16383 781 aaKnown RBP12.22□□□□□ -0.45
SYNE2-227ENST00000557307 ZSCAN20P17040 1043 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-227ENST00000557307 LAG3P18627 525 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 SMAD4Q13485 552 aaKnown RBP12.22□□□□□ -0.45
SYNE2-227ENST00000557307 KCNC3Q14003 757 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 EMC2Q15006 297 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 EPHA7Q15375 998 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 DUSP6Q16828 381 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 UBXN11Q5T124 520 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 LLGL2Q6P1M3 1020 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 CCDC83Q8IWF9 413 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 ADHFE1Q8IWW8 467 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 SLC39A11Q8N1S5 342 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 SMRP1Q8NCR6 262 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 AUTS2Q8WXX7 1259 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 MRPS27Q92552 414 aaKnown RBP12.22□□□□□ -0.45
SYNE2-227ENST00000557307 CEP170P1Q96L14 293 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 APOL5Q9BWW9 433 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 VN1R3Q9BXE9 311 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 C1QTNF1Q9BXJ1 281 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 GCOM2Q9BZD3 368 aaPredicted RBP12.22□□□□□ -0.45
SYNE2-227ENST00000557307 TLE6Q9H808 572 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 DNAJB4Q9UDY4 337 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 COL4A3BPQ9Y5P4 624 aa12.22□□□□□ -0.45
SYNE2-227ENST00000557307 TECTAO75443 2155 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 POTEMA6NI47 508 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 TBX3O15119 743 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 EYA4O95677 639 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 YWHABP31946 246 aaKnown RBP12.21□□□□□ -0.45
SYNE2-227ENST00000557307 POLGP54098 1239 aaPredicted RBP12.21□□□□□ -0.45
SYNE2-227ENST00000557307 PLCB3Q01970 1234 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 UBE3AQ05086 875 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 ANKRD1Q15327 319 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 PUS10Q3MIT2 529 aaKnown RBP12.21□□□□□ -0.45
SYNE2-227ENST00000557307 C8orf34Q49A92 452 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 TMEM31Q5JXX7 168 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 TWF2Q6IBS0 349 aaKnown RBP12.21□□□□□ -0.45
SYNE2-227ENST00000557307 AGMOQ6ZNB7 445 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 CATSPER4Q7RTX7 472 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 ZNF410Q86VK4 478 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 C4orf19Q8IY42 314 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 ASAP3Q8TDY4 903 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 MICAL1Q8TDZ2 1067 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 PRPF31Q8WWY3 499 aaKnown RBP12.21□□□□□ -0.45
SYNE2-227ENST00000557307 ZNF558Q96NG5 402 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 TCF25Q9BQ70 676 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 EIF2AK1Q9BQI3 630 aaKnown RBP12.21□□□□□ -0.45
SYNE2-227ENST00000557307 AGPAT5Q9NUQ2 364 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 FAM105AQ9NUU6 356 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 MUTYHQ9UIF7 546 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 INPP5FQ9Y2H2 1132 aa12.21□□□□□ -0.45
SYNE2-227ENST00000557307 USP15Q9Y4E8 981 aaPredicted RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms