RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 DONSONQ9NYP3 566 aa5.35□□□□□ -1.55
SYNE2-223ENST00000557005 LARSQ9P2J5 1176 aaKnown RBP5.35□□□□□ -1.55
SYNE2-223ENST00000557005 MCM8Q9UJA3 840 aa5.35□□□□□ -1.55
SYNE2-223ENST00000557005 FAF1Q9UNN5 650 aaPredicted RBP5.35□□□□□ -1.55
SYNE2-223ENST00000557005 TESPA1A2RU30 521 aaPredicted RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 FAM187AA6NFU0 413 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L15C9J2P7 530 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L13C9JLJ4 530 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L11C9JVI0 530 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L18D6R9N7 530 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L22D6RA61 530 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L17D6RBQ6 530 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L19D6RCP7 530 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L20D6RJB6 530 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SPECC1L-ADORA2AF8WAN1 911 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 FTLP02792 175 aaPredicted RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 ENO1P06733 434 aaKnown RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 TRIM49P0CI25 452 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 TRIM49CP0CI26 452 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SKIP12755 728 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 BRAFP15056 766 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 RCAN1P53805 252 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SLC20A2Q08357 652 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L24Q0WX57 530 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 MEI1Q5TIA1 1274 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 USP17L6PQ6QN14 398 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SCARA5Q6ZMJ2 495 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 ZBTB33Q86T24 672 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 ZBED8Q8IZ13 594 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SYT2Q8N9I0 419 aaPredicted RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 POMGNT1Q8WZA1 660 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 FAM161BQ96MY7 647 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 C8orf37Q96NL8 207 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 DNAI2Q9GZS0 605 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 FGFR1OP2Q9NVK5 253 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 FIS1Q9Y3D6 152 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 KIF1AQ12756 1690 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 WDR17Q8IZU2 1322 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 TCRBV5S4A2TA0A5A2 114 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 RCCD1A6NED2 376 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 H7C0C1 242 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 hCG_1984214I3L0E3 225 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 CLDN3O15551 220 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SLC37A4O43826 429 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 LPXNO60711 386 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 CCND1P24385 295 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 CHRNA3P32297 505 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 ATP5OP48047 213 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 GCLMP48507 274 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 CTCFP49711 727 aaPredicted RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 DHX34Q14147 1143 aaKnown RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 PKN1Q16512 942 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SYDE2Q5VT97 1194 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SMIM5Q71RC9 77 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 TMEM139Q8IV31 216 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 ZNF713Q8N859 430 aaPredicted RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 TPCN2Q8NHX9 752 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 ZNF507Q8TCN5 953 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 NSMCE1Q8WV22 266 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 NT5C1BQ96P26 610 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 LRRC37BQ96QE4 947 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 Q9H521 79 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 BSDC1Q9NW68 430 aaPredicted RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SEPT9Q9UHD8 586 aaPredicted RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 ARL2BPQ9Y2Y0 163 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 FAM205AQ6ZU69 1335 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 KDM6AO15550 1401 aaPredicted RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 CFAP69A5D8W1 941 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 GOLGA8RI6L899 631 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 KIF3CO14782 793 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 SLC9A1P19634 815 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 LGSNQ5TDP6 509 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 C1orf146Q5VVC0 180 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 JAMLQ86YT9 394 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 CPXCR1Q8N123 301 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 METTL13Q8N6R0 699 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 CEP95Q96GE4 821 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 LACRTQ9GZZ8 138 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.34□□□□□ -1.557e-7■■■■□ 26.5
SYNE2-223ENST00000557005 SRP68Q9UHB9 627 aaKnown RBP5.34□□□□□ -1.55
SYNE2-223ENST00000557005 ANAPC7Q9UJX3 599 aa5.34□□□□□ -1.55
SYNE2-223ENST00000557005 PDE2AO00408 941 aaPredicted RBP5.34□□□□□ -1.56
SYNE2-223ENST00000557005 RPS6KA5O75582 802 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 HAUS5O94927 633 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 CD19P15391 556 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 CD58P19256 250 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 KCNA3P22001 575 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 ELF3P78545 371 aaPredicted RBP5.34□□□□□ -1.56
SYNE2-223ENST00000557005 GRB10Q13322 594 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 KLHDC7AQ5VTJ3 777 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 IZUMO3Q5VZ72 239 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 CEP70Q8NHQ1 597 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 FAM129AQ9BZQ8 928 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 PARVGQ9HBI0 331 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 FAM53CQ9NYF3 392 aa5.34□□□□□ -1.56
SYNE2-223ENST00000557005 PVALEFA0A1B0GWK0 134 aa5.33□□□□□ -1.56
SYNE2-223ENST00000557005 TMEM120BA0PK00 339 aa5.33□□□□□ -1.56
SYNE2-223ENST00000557005 ZNF233A6NK53 670 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms