RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 PTGDRQ13258 359 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 ADGRE1Q14246 886 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 EMC2Q15006 297 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 HAUS3Q68CZ6 603 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 SPRED2Q7Z698 418 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 RTN4RL1Q86UN2 441 aaPredicted RBP12.87□□□□□ -0.35
SLIRP-205ENST00000556310 ARNTL2Q8WYA1 636 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 INTS4Q96HW7 963 aaKnown RBP12.87□□□□□ -0.35
SLIRP-205ENST00000556310 CCDC43Q96MW1 224 aaKnown RBP12.87□□□□□ -0.35
SLIRP-205ENST00000556310 TGS1Q96RS0 853 aaKnown RBP12.87□□□□□ -0.35
SLIRP-205ENST00000556310 POLR3CQ9BUI4 534 aaPredicted RBP12.87□□□□□ -0.35
SLIRP-205ENST00000556310 CERS4Q9HA82 394 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 C1orf112Q9NSG2 853 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 ARIH1Q9Y4X5 557 aaPredicted RBP12.87□□□□□ -0.35
SLIRP-205ENST00000556310 COL4A3BPQ9Y5P4 624 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 PRUNE2Q8WUY3 3088 aa12.87□□□□□ -0.35
SLIRP-205ENST00000556310 DENND3A2RUS2 1198 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 EPOPA6NHQ4 379 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 ZBTB39O15060 712 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 MED24O75448 989 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 STAG3L1P0CL83 205 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 XRCC6P12956 609 aaKnown RBP eCLIP12.86□□□□□ -0.35
SLIRP-205ENST00000556310 RPA1P27694 616 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 PRPHP41219 470 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 SARSP49591 514 aaKnown RBP12.86□□□□□ -0.35
SLIRP-205ENST00000556310 RARRES1P49788 294 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 DSC3Q14574 896 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 BRAPQ7Z569 592 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 CATSPER3Q86XQ3 398 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 RHPN2Q8IUC4 686 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 CRIPAKQ8N1N5 446 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 IGSF22Q8N9C0 903 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 TCP11Q8WWU5 503 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 PSPC1Q8WXF1 523 aaKnown RBP12.86□□□□□ -0.35
SLIRP-205ENST00000556310 SNX21Q969T3 373 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 ZNF668Q96K58 619 aaPredicted RBP12.86□□□□□ -0.35
SLIRP-205ENST00000556310 SAMD11Q96NU1 681 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 MTRQ99707 1265 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 ADAM2Q99965 735 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 GCOM2Q9BZD3 368 aaPredicted RBP12.86□□□□□ -0.35
SLIRP-205ENST00000556310 RAB34Q9BZG1 259 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 RGS18Q9NS28 235 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 PRRC2BQ5JSZ5 2229 aaKnown RBP12.86□□□□□ -0.35
SLIRP-205ENST00000556310 MYH15Q9Y2K3 1946 aa12.86□□□□□ -0.35
SLIRP-205ENST00000556310 A0A087WZ62 844 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 VPS37CA5D8V6 355 aaPredicted RBP12.85□□□□□ -0.35
SLIRP-205ENST00000556310 C9IYK1 514 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 DGAT1O75907 488 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 DGKIO75912 1065 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 MUTP22033 750 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 SFPQP23246 707 aaKnown RBP eCLIP12.85□□□□□ -0.35
SLIRP-205ENST00000556310 ATP2C1P98194 919 aaPredicted RBP12.85□□□□□ -0.35
SLIRP-205ENST00000556310 PDIA5Q14554 519 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 POTEGQ6S5H5 508 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 SLC24A5Q71RS6 500 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 PIGOQ8TEQ8 1089 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 TMEM143Q96AN5 459 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 ZNF689Q96CS4 500 aaPredicted RBP12.85□□□□□ -0.35
SLIRP-205ENST00000556310 NLRP4Q96MN2 994 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 FDXACB1Q9BRP7 624 aaPredicted RBP12.85□□□□□ -0.35
SLIRP-205ENST00000556310 INO80BQ9C086 356 aaPredicted RBP12.85□□□□□ -0.35
SLIRP-205ENST00000556310 ATP6V0A4Q9HBG4 840 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 XPNPEP1Q9NQW7 623 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 LRWD1Q9UFC0 647 aa12.85□□□□□ -0.35
SLIRP-205ENST00000556310 DBR1Q9UK59 544 aaKnown RBP12.85□□□□□ -0.35
SLIRP-205ENST00000556310 REV3LO60673 3130 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 UNC80Q8N2C7 3258 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 POU3F3P20264 500 aaPredicted RBP12.84□□□□□ -0.35
SLIRP-205ENST00000556310 IGFBP4P22692 258 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 CCT6AP40227 531 aaKnown RBP12.84□□□□□ -0.35
SLIRP-205ENST00000556310 LAMTOR4Q0VGL1 99 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 DTHD1Q6ZMT9 781 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 FERMT3Q86UX7 667 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 KSR1Q8IVT5 923 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 CMTR2Q8IYT2 770 aaKnown RBP12.84□□□□□ -0.35
SLIRP-205ENST00000556310 FIBCD1Q8N539 461 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 GDPD5Q8WTR4 605 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 PRPF31Q8WWY3 499 aaKnown RBP12.84□□□□□ -0.35
SLIRP-205ENST00000556310 NACC1Q96RE7 527 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 C17orf80Q9BSJ5 609 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 IFT122Q9HBG6 1241 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 MTUS1Q9ULD2 1270 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 LRFN2Q9ULH4 789 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 ATG2AQ2TAZ0 1938 aa12.84□□□□□ -0.35
SLIRP-205ENST00000556310 RFXAPO00287 272 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 ASAP2O43150 1006 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 LPXNO60711 386 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 USO1O60763 962 aaKnown RBP12.83□□□□□ -0.36
SLIRP-205ENST00000556310 LINC00271P0C7V0 271 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 ZSCAN20P17040 1043 aaPredicted RBP12.83□□□□□ -0.36
SLIRP-205ENST00000556310 FGFR4P22455 802 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 GRB10Q13322 594 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 BTG3Q14201 252 aaPredicted RBP12.83□□□□□ -0.36
SLIRP-205ENST00000556310 MXD4Q14582 209 aaPredicted RBP12.83□□□□□ -0.36
SLIRP-205ENST00000556310 EPC2Q52LR7 807 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 ARL6IP4Q66PJ3 421 aaKnown RBP12.83□□□□□ -0.36
SLIRP-205ENST00000556310 SRGAP1Q7Z6B7 1085 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 HSCBQ8IWL3 235 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 MCPH1Q8NEM0 835 aa12.83□□□□□ -0.36
SLIRP-205ENST00000556310 SNX29Q8TEQ0 813 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms