RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ZNF598Q86UK7 904 aaKnown RBP17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 ECHDC2Q86YB7 292 aa17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 TPH2Q8IWU9 490 aa17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 FDXACB1Q9BRP7 624 aaPredicted RBP17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 POLR3CQ9BUI4 534 aaPredicted RBP17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 TMEM117Q9H0C3 514 aa17.91■□□□□ 0.46
CCDC88C-209ENST00000554872 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 POTEMA6NI47 508 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 SPATA31C1P0DKV0 1188 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 SKIP12755 728 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 RARRES1P49788 294 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 FXR2P51116 673 aaKnown RBP eCLIP17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 MXD4Q14582 209 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 XKR9Q5GH70 373 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 FERMT3Q86UX7 667 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 IFNLR1Q8IU57 520 aaPredicted RBP17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 C4orf32Q8N8J7 132 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 MTRQ99707 1265 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 NSUN3Q9H649 340 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 XPNPEP1Q9NQW7 623 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 RNF19AQ9NV58 838 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 DBR1Q9UK59 544 aaKnown RBP17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 PLAGL2Q9UPG8 496 aa17.9■□□□□ 0.46
CCDC88C-209ENST00000554872 LAD1O00515 517 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 NCK2O43639 380 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 ZNF623O75123 536 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 ATF7P17544 494 aaPredicted RBP17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 RPA1P27694 616 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 GATMP50440 423 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 RAB27AP51159 221 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 UBE3AQ05086 875 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 LAMTOR4Q0VGL1 99 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 GNL2Q13823 731 aaKnown RBP17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 SKIV2LQ15477 1246 aaKnown RBP17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 FAM102BQ5T8I3 360 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 ERMNQ8TAM6 284 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 PRPF31Q8WWY3 499 aaKnown RBP17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 NLRP4Q96MN2 994 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 NFKBIZQ9BYH8 718 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 AAASQ9NRG9 546 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 AGPAT5Q9NUQ2 364 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 ATG2AQ2TAZ0 1938 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 BRWD1Q9NSI6 2320 aa17.89■□□□□ 0.45
CCDC88C-209ENST00000554872 ZBTB39O15060 712 aa17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 GRM6O15303 877 aa17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 BMP1P13497 986 aa17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 TOB1P50616 345 aaPredicted RBP17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 PAN2Q504Q3 1202 aaKnown RBP17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 CATSPER3Q86XQ3 398 aa17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 KSR1Q8IVT5 923 aa17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 LRRC43Q8N309 656 aa17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 TMEM143Q96AN5 459 aa17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 ZNF668Q96K58 619 aaPredicted RBP17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 CASD1Q96PB1 797 aa17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 STK24Q9Y6E0 443 aa17.88■□□□□ 0.45
CCDC88C-209ENST00000554872 CARNS1A5YM72 827 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 TBKBP1A7MCY6 615 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 ITGB1P05556 798 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 FGFR1P11362 822 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 LAG3P18627 525 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 ATP2B1P20020 1258 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 FGFR4P22455 802 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 ARL2P36404 184 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 PRPHP41219 470 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 PHKA2P46019 1235 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 CAMK1Q14012 370 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 PDIA5Q14554 519 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 ZNF174Q15697 407 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 HAUS3Q68CZ6 603 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 CATSPER4Q7RTX7 472 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 IGSF22Q8N9C0 903 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 SPPL3Q8TCT6 385 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 NACC1Q96RE7 527 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 MRPL9Q9BYD2 267 aaKnown RBP17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 CWH43Q9H720 699 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 UBE2ZQ9H832 354 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 PCDHB12Q9Y5F1 795 aa17.87■□□□□ 0.45
CCDC88C-209ENST00000554872 MED24O75448 989 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 CSDE1O75534 798 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 TECP42680 631 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 PTENP60484 403 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 TFF2Q03403 129 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 RILPL1Q5EBL4 403 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 TCEAL5Q5H9L2 206 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 CLLU1OSQ5K130 101 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 ABI1Q8IZP0 508 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 KLHL23Q8NBE8 558 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 RNF149Q8NC42 400 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 MCPH1Q8NEM0 835 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 PABPC5Q96DU9 382 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 CCDC51Q96ER9 411 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 BACH2Q9BYV9 841 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 RAB34Q9BZG1 259 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 DAXXQ9UER7 740 aaPredicted RBP17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 PIN4Q9Y237 131 aaKnown RBP17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 LZTS1Q9Y250 596 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 NCOR1O75376 2440 aa17.86■□□□□ 0.45
CCDC88C-209ENST00000554872 GJB2P29033 226 aa17.85■□□□□ 0.45
CCDC88C-209ENST00000554872 AXLP30530 894 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms