RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 MEIS2O14770 477 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 TGFB1I1O43294 461 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 TTLL1O95922 423 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 IL1R1P14778 569 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 GCFC2P16383 781 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 ANXA13P27216 316 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 SHMT1P34896 483 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 IFI35P80217 286 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 KLRC3Q07444 240 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PRPF4BQ13523 1007 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PLS1Q14651 629 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 COG2Q14746 738 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 QRICH1Q2TAL8 776 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 LACTB2Q53H82 288 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 WLSQ5T9L3 541 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 DUPD1Q68J44 220 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PPP1R18Q6NYC8 613 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 ARMC9Q7Z3E5 817 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PARP9Q8IXQ6 854 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CACNA2D3Q8IZS8 1091 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 SYT2Q8N9I0 419 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CCDC26Q8TAB7 109 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CYP2W1Q8TAV3 490 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 FBXO25Q8TCJ0 367 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 LMBR1Q8WVP7 490 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 ATXN2LQ8WWM7 1075 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 WNT2BQ93097 391 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 LENG9Q96B70 501 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 MBOAT7Q96N66 472 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 XPO6Q96QU8 1125 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PSMD1Q99460 953 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 FMO2Q99518 471 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 TACO1Q9BSH4 297 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 ANO3Q9BYT9 981 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 TMOD4Q9NZQ9 345 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 THRAP3Q9Y2W1 955 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 SNX24Q9Y343 169 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 MYO3BQ8WXR4 1341 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CYP3A7-CYP3A51PA0A087WV96 503 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 SPDYE3A6NKU9 549 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 SMIM23A6NLE4 172 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 FAM86B1E9PN63 330 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PPIP5K2O43314 1243 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CTNND1O60716 968 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 LRRN2O75325 713 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 FAM86B2P0C5J1 330 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CHN1P15882 459 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CYP3A7P24462 503 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 MARCKSL1P49006 195 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PTENP60484 403 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 XRCC4Q13426 336 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CBWD6Q4V339 395 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 ZC2HC1CQ53FD0 456 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 PRR16Q569H4 304 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CBWD3Q5JTY5 395 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CBWD5Q5RIA9 395 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 C15orf52Q6ZUT6 534 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 CPLX4Q7Z7G2 160 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 UHMK1Q8TAS1 419 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 HVCN1Q96D96 273 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 SGSM3Q96HU1 749 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 MXD3Q9BW11 206 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 FAM129AQ9BZQ8 928 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 FAM114A2Q9NRY5 505 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 RGL1Q9NZL6 768 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 POLLQ9UGP5 575 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 AMFRQ9UKV5 643 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 TTC7AQ9ULT0 858 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 BCS1LQ9Y276 419 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 UTP11Q9Y3A2 253 aaKnown RBP5.88□□□□□ -1.47
LIMA1-212ENST00000552491 ATP8B3O60423 1300 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 RPTORQ8N122 1335 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 ADAMTSL1Q8N6G6 1762 aa5.88□□□□□ -1.47
LIMA1-212ENST00000552491 ZNF831Q5JPB2 1677 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 EML1O00423 815 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 ZBTB39O15060 712 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 KIAA0391O15091 583 aaKnown RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 SLC26A4O43511 780 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 NMT1P30419 496 aaKnown RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 PTGIRP43119 386 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 CDR1P51861 262 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 PLTPP55058 493 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 NPEPPSP55786 919 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 ARHGAP4P98171 946 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 IFFO1Q0D2I5 559 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 SLC29A2Q14542 456 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 DRAP1Q14919 205 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 E2F5Q15329 346 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 BMT2Q1RMZ1 405 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 GKAP1Q5VSY0 366 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-212ENST00000552491 CEP57Q86XR8 500 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 CPNE8Q86YQ8 564 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 RFFLQ8WZ73 363 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 KRT35Q92764 455 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 C18orf8Q96DM3 657 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 CHMP6Q96FZ7 201 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 ERP44Q9BS26 406 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 THAP2Q9H0W7 228 aa5.87□□□□□ -1.47
LIMA1-212ENST00000552491 BHMT2Q9H2M3 363 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms