RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 USP17L6PQ6QN14 398 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 PIGWQ7Z7B1 504 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 JAMLQ86YT9 394 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 CLEC10AQ8IUN9 316 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 TEX2Q8IWB9 1127 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 RPGRQ92834 1020 aaKnown RBP9.47□□□□□ -0.89
TDP1-204ENST00000545686 LENG9Q96B70 501 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 CCDC17Q96LX7 622 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 NSRP1Q9H0G5 558 aaKnown RBP9.47□□□□□ -0.89
TDP1-204ENST00000545686 PCYOX1Q9UHG3 505 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 PNMA2Q9UL42 364 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 TPX2Q9ULW0 747 aaKnown RBP9.47□□□□□ -0.89
TDP1-204ENST00000545686 SLC12A4Q9UP95 1085 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 PCDHA1Q9Y5I3 950 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 UBR3Q6ZT12 1888 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 CFAP73A6NFT4 308 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 PHF20L1A8MW92 1017 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 MEIS2O14770 477 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 TGFB1I1O43294 461 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 CHN1P15882 459 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 VCAM1P19320 739 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 ELF1P32519 619 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 CIITAP33076 1130 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 KIF22Q14807 665 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 DRAP1Q14919 205 aaPredicted RBP9.47□□□□□ -0.89
TDP1-204ENST00000545686 PRR16Q569H4 304 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 GJB7Q6PEY0 223 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 ZDHHC24Q6UX98 284 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 KCTD1Q719H9 257 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 DNAAF5Q86Y56 855 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 GLYCTKQ8IVS8 523 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 ARHGEF1Q92888 912 aaKnown RBP9.47□□□□□ -0.89
TDP1-204ENST00000545686 SEL1LQ9UBV2 794 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 MTRF1LQ9UGC7 380 aaKnown RBP9.47□□□□□ -0.89
TDP1-204ENST00000545686 DNAJC12Q9UKB3 198 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 VAV3Q9UKW4 847 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 RABGAP1Q9Y3P9 1069 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 IGSF9BQ9UPX0 1349 aa9.47□□□□□ -0.89
TDP1-204ENST00000545686 RGS16O15492 202 aaPredicted RBP9.46□□□□□ -0.89
TDP1-204ENST00000545686 HLA-DOAP06340 250 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 MMP14P50281 582 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 PICALMQ13492 652 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 RIPK1Q13546 671 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 SLMAPQ14BN4 828 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 TNFAIP8L3Q5GJ75 292 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 MSL1Q68DK7 614 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 STXBP4Q6ZWJ1 553 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 SMIM5Q71RC9 77 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 SLC51AQ86UW1 340 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 UBL4BQ8N7F7 174 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 PROCA1Q8NCQ7 364 aaPredicted RBP9.46□□□□□ -0.89
TDP1-204ENST00000545686 MORC4Q8TE76 937 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 MKL1Q969V6 931 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 RUSC1Q9BVN2 902 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 GPR88Q9GZN0 384 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 ADAM7Q9H2U9 754 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 ATP6V0A4Q9HBG4 840 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 SAMD15Q9P1V8 674 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 APEX2Q9UBZ4 518 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 ODF2LQ9ULJ1 636 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 TRPC6Q9Y210 931 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 NR2E1Q9Y466 385 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 PCDHB13Q9Y5F0 798 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 RGPD3A6NKT7 1758 aaPredicted RBP9.46□□□□□ -0.89
TDP1-204ENST00000545686 RGPD4Q7Z3J3 1758 aa9.46□□□□□ -0.89
TDP1-204ENST00000545686 RSPH10B2B2RC85 870 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 RSPH10BP0C881 870 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 TNFAIP3P21580 790 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 CTNNA2P26232 953 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 PTGIRP43119 386 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 AFF2P51816 1311 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 KCNQ4P56696 695 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 PRPF4BQ13523 1007 aaKnown RBP9.46□□□□□ -0.9
TDP1-204ENST00000545686 MFSD5Q6N075 450 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 CRELD2Q6UXH1 353 aaPredicted RBP9.46□□□□□ -0.9
TDP1-204ENST00000545686 FAM228AQ86W67 206 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 RPTORQ8N122 1335 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 TRIM31Q9BZY9 425 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 INTS2Q9H0H0 1204 aaKnown RBP9.46□□□□□ -0.9
TDP1-204ENST00000545686 BHMT2Q9H2M3 363 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 ERVK-5Q9HDB9 667 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 TUFT1Q9NNX1 390 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 DONSONQ9NYP3 566 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.46□□□□□ -0.9
TDP1-204ENST00000545686 GRHL1Q9NZI5 618 aa9.46□□□□□ -0.9
TDP1-204ENST00000545686 MEIS1O00470 390 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 CLIC2O15247 247 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 FAM13AO94988 1023 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 SHBGP04278 402 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 ALAS1P13196 640 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 MUTP22033 750 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 PLTPP55058 493 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 ELF3P78545 371 aaPredicted RBP9.45□□□□□ -0.9
TDP1-204ENST00000545686 MYL7Q01449 175 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 CYP1B1Q16678 543 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 TAOK1Q7L7X3 1001 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 HS2ST1Q7LGA3 356 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 MDM1Q8TC05 714 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 FBXO25Q8TCJ0 367 aa9.45□□□□□ -0.9
TDP1-204ENST00000545686 CCHCR1Q8TD31 782 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms