RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 JMJD4Q9H9V9 463 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 ARHGEF3Q9NR81 526 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 RGS18Q9NS28 235 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 ECHDC1Q9NTX5 307 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 ST3GAL5Q9UNP4 418 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 NOC2LQ9Y3T9 749 aaKnown RBP5.5□□□□□ -1.53
LIMS1-214ENST00000542845 MTF2Q9Y483 593 aaPredicted RBP5.5□□□□□ -1.53
LIMS1-214ENST00000542845 PCDHGA2Q9Y5H1 932 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 CEP250Q9BV73 2442 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 CHD6Q8TD26 2715 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 ATRXP46100 2492 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 COL4A3Q01955 1670 aa5.5□□□□□ -1.53
LIMS1-214ENST00000542845 IGSF9BQ9UPX0 1349 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 CCDC195A0A1B0GUA6 201 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 PALM3A6NDB9 673 aaPredicted RBP5.49□□□□□ -1.53
LIMS1-214ENST00000542845 RRN3P2A6NIE6 340 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 FAM170BA6NMN3 283 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 SPATA31C2B4DYI2 1134 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 C9IYK1 514 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 GCOM1H8Y6P7 765 aaPredicted RBP5.49□□□□□ -1.53
LIMS1-214ENST00000542845 ARHGAP33O14559 1287 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 OPLAHO14841 1288 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 HRO43593 1189 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 ORC4O43929 436 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 N4BP1O75113 896 aaKnown RBP5.49□□□□□ -1.53
LIMS1-214ENST00000542845 POLR2MP0CAP2 368 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 TGM1P22735 817 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 NOVP48745 357 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 HSD17B4P51659 736 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 HAND2P61296 217 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 MRPS9P82933 396 aaKnown RBP5.49□□□□□ -1.53
LIMS1-214ENST00000542845 KCNA1Q09470 495 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 NR6A1Q15406 480 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 ZNF528Q3MIS6 628 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 LONRF3Q496Y0 759 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 KMT5BQ4FZB7 885 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 VPS53Q5VIR6 699 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 PHLDB3Q6NSJ2 640 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 STOX1Q6ZVD7 989 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 HOMER1Q86YM7 354 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 PRR7Q8TB68 274 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 SLC22A17Q8WUG5 538 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 TMEM169Q96HH4 297 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 SHDQ96IW2 340 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 TTC14Q96N46 770 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 CASD1Q96PB1 797 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 LRRCC1Q9C099 1032 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 MAF1Q9H063 256 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 TMEM117Q9H0C3 514 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 EPC1Q9H2F5 836 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 KAT14Q9H8E8 782 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 SFXN1Q9H9B4 322 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 PIDD1Q9HB75 910 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 C1orf112Q9NSG2 853 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 TCP11L1Q9NUJ3 509 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 TMEM161AQ9NX61 479 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 ZSCAN32Q9NX65 697 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 ERAP1Q9NZ08 941 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 FBXO4Q9UKT5 387 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 SQORQ9Y6N5 450 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 USP24Q9UPU5 2620 aa5.49□□□□□ -1.53
LIMS1-214ENST00000542845 PATJQ8NI35 1801 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 EVPLQ92817 2033 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 GSTTP1A0A1W2PQM5 241 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 KANSL1LA0AUZ9 987 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 MBLAC1A4D2B0 266 aaPredicted RBP5.48□□□□□ -1.53
LIMS1-214ENST00000542845 C2CD2LO14523 706 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 GPR182O15218 404 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 FIBPO43427 364 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 ZC3H11AO75152 810 aaKnown RBP eCLIP5.48□□□□□ -1.53
LIMS1-214ENST00000542845 PARP1P09874 1014 aaKnown RBP5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SPATA31D3P0C874 917 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SNHG28P0DPA3 235 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SPINK2P20155 84 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 PMLP29590 882 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SOX11P35716 441 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 RBM25P49756 843 aaKnown RBP5.48□□□□□ -1.53
LIMS1-214ENST00000542845 BCAR1P56945 870 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 GPC5P78333 572 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 RING1Q06587 406 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 PLCB4Q15147 1175 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 AASDHQ4L235 1098 aaPredicted RBP5.48□□□□□ -1.53
LIMS1-214ENST00000542845 ODR4Q5SWX8 454 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 FOXD4L5Q5VV16 416 aaPredicted RBP5.48□□□□□ -1.53
LIMS1-214ENST00000542845 UNQ6494/PRO21346Q6UXR6 183 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 PRR23CQ6ZRP0 262 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 MFSD6Q6ZSS7 791 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SPATA31D4Q6ZUB0 917 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 TRMT1LQ7Z2T5 733 aaKnown RBP5.48□□□□□ -1.53
LIMS1-214ENST00000542845 NLRX1Q86UT6 975 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SIRT2Q8IXJ6 389 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SLC39A11Q8N1S5 342 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 LRRC43Q8N309 656 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 HELQQ8TDG4 1101 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 EPS8L1Q8TE68 723 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 FOXD4L4Q8WXT5 416 aaPredicted RBP5.48□□□□□ -1.53
LIMS1-214ENST00000542845 PIBF1Q8WXW3 757 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 SEPT1Q8WYJ6 367 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 GPATCH3Q96I76 525 aa5.48□□□□□ -1.53
LIMS1-214ENST00000542845 MYADMQ96S97 322 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms