RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	DDX47	Q9H0S4	455 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	NEUROG2	Q9H2A3	272 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	EHMT1	Q9H9B1	1298 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	KCNH7	Q9NS40	1196 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	AJAP1	Q9UKB5	411 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	TMEM150B	A6NC51	233 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	HMGB1P1	B2RPK0	211 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	NFKBIE	O00221	500 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	CES2	O00748	559 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	SART1	O43290	800 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	CLSTN1	O94985	981 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	MYCL	P12524	364 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	XRCC5	P13010	732 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	MDH1	P40925	334 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	PTGIS	Q16647	500 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	EMC10	Q5UCC4	262 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	GJB7	Q6PEY0	223 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	FRMD5	Q7Z6J6	570 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	METTL13	Q8N6R0	699 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	PRPF38A	Q8NAV1	312 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	RDH13	Q8NBN7	331 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	MTMR14	Q8NCE2	650 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	ACTRT1	Q8TDG2	376 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	ZBED3	Q96IU2	234 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	PBK	Q96KB5	322 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	TEPSIN	Q96N21	525 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	TEKT3	Q9BXF9	490 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	PLCB1	Q9NQ66	1216 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	TRAF3IP3	Q9Y228	551 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	NOC2L	Q9Y3T9	749 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	GMPS	P49915	693 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	UAP1	Q16222	522 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	ODR4	Q5SWX8	454 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	MMS22L	Q6ZRQ5	1243 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	TPCN2	Q8NHX9	752 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	ZNF473	Q8WTR7	871 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	WNK4	Q96J92	1243 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	MXRA8	Q9BRK3	442 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	PARVG	Q9HBI0	331 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	TMBIM4	Q9HC24	238 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	TUFT1	Q9NNX1	390 aa		13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	BZW2	Q9Y6E2	419 aa	Known RBP	13.6	□□□□□ -0.23
RNF4-222	ENST00000541204	GOLGA6L10	A6NI86	522 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	PDXK	O00764	312 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	TGFB1I1	O43294	461 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	SLC26A4	O43511	780 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	KIAA0754	O94854	1291 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	CYP2J2	P51589	502 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	SPP2	Q13103	211 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	IFI16	Q16666	785 aa	Known RBP	13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	NSMF	Q6X4W1	530 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	FAM178B	Q8IXR5	827 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	OTUD6B	Q8N6M0	293 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	CLEC4D	Q8WXI8	215 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	TYW1	Q9NV66	732 aa	Known RBP	13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	HACL1	Q9UJ83	578 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	CAPN7	Q9Y6W3	813 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	ARHGEF35	A5YM69	484 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	PGRMC1	O00264	195 aa	Known RBP	13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	KRIT1	O00522	736 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	MEFV	O15553	781 aa	Predicted RBP	13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	ZBTB48	P10074	688 aa	Predicted RBP	13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	ITGA4	P13612	1032 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	CTNNA1	P35221	906 aa	Known RBP	13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	FLT3	P36888	993 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	EPHA7	Q15375	998 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	MIER3	Q7Z3K6	550 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	PEX26	Q7Z412	305 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	NLRP14	Q86W24	1093 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	NACC1	Q96RE7	527 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	TAAR1	Q96RJ0	339 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	CCT8L2	Q96SF2	557 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.59	□□□□□ -0.23	7e-7	■■■□□ 16.9
RNF4-222	ENST00000541204	DEFB129	Q9H1M3	183 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	AMACR	Q9UHK6	382 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204	STK24	Q9Y6E0	443 aa		13.59	□□□□□ -0.23
RNF4-222	ENST00000541204		E7EVH7	732 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204		H0YGN5	161 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	MYZAP	P0CAP1	466 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	VCAM1	P19320	739 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	CUL1	Q13616	776 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	TNIP1	Q15025	636 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	C1orf131	Q8NDD1	294 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	MYCBPAP	Q8TBZ2	947 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	IPO4	Q8TEX9	1081 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	PPAN	Q9NQ55	473 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	NFS1	Q9Y697	457 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	RPL13	P26373	211 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	PRKG1	Q13976	671 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	DAAM2	Q86T65	1068 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	SIX2	Q9NPC8	291 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	GCNT4	Q9P109	453 aa		13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	CNOT7	Q9UIV1	285 aa	Known RBP	13.58	□□□□□ -0.24
RNF4-222	ENST00000541204	DAPK3	O43293	454 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms